View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_22 (Length: 251)
Name: NF0621_low_22
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31455232 - 31454992
Alignment:
| Q |
1 |
tttcctcgtcttctacgtatagcggattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaactacatgcatctaaaagtgtaa |
100 |
Q |
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| T |
31455232 |
tttcctcgtcttctacgtatagccgattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaaccacatgcatctaaaagtgtaa |
31455133 |
T |
|
| Q |
101 |
ctgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgta |
200 |
Q |
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| T |
31455132 |
ctgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgta |
31455033 |
T |
|
| Q |
201 |
tagctctgcaagcgcaactaaatcactttgaattgtctctg |
241 |
Q |
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| T |
31455032 |
taactcagcaagcacaaccaaatcactttgaattgtctctg |
31454992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 9385376 - 9385463
Alignment:
| Q |
156 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcgcaactaaatcactttgaattgtctctgct |
243 |
Q |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgct |
9385463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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