View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_24 (Length: 215)
Name: NF0621_low_24
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38299684 - 38299813
Alignment:
| Q |
1 |
aagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaagcaacagctggctactattcc |
100 |
Q |
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| T |
38299684 |
aagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcc |
38299783 |
T |
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| Q |
101 |
taataggatatctttaacttttgatctgtg |
130 |
Q |
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| T |
38299784 |
taataggatatctttaacttttgatctgtg |
38299813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 38320475 - 38320558
Alignment:
| Q |
47 |
ggatttgtacactgaagagaaactcaatattaagcaacagctggctactattcctaataggatatctttaacttttgatctgtg |
130 |
Q |
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| T |
38320475 |
ggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaactgttgatctgtg |
38320558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 38305690 - 38305732
Alignment:
| Q |
88 |
tggctactattcctaataggatatctttaacttttgatctgtg |
130 |
Q |
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| T |
38305690 |
tggctaccattcctaataggatatctttaacttttgatttgtg |
38305732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 38316379 - 38316460
Alignment:
| Q |
49 |
atttgtacactgaagagaaactcaatattaagcaacagctggctactattcctaataggatatctttaacttttgatctgtg |
130 |
Q |
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| T |
38316379 |
atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtg |
38316460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 38325263 - 38325305
Alignment:
| Q |
88 |
tggctactattcctaataggatatctttaacttttgatctgtg |
130 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
38325263 |
tggctaccattcctaatagggtatctttaacttttgatttgtg |
38325305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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