View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0621_low_5 (Length: 601)

Name: NF0621_low_5
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0621_low_5
NF0621_low_5
[»] chr8 (4 HSPs)
chr8 (1-591)||(27185413-27186014)
chr8 (78-155)||(27229433-27229510)
chr8 (258-297)||(31684777-31684816)
chr8 (304-355)||(37748060-37748111)
[»] chr5 (3 HSPs)
chr5 (304-434)||(919338-919468)
chr5 (507-567)||(3175091-3175153)
chr5 (252-297)||(43405998-43406043)
[»] chr6 (1 HSPs)
chr6 (304-440)||(29973641-29973777)
[»] chr2 (4 HSPs)
chr2 (507-567)||(21647522-21647582)
chr2 (304-352)||(21648703-21648751)
chr2 (507-567)||(3934503-3934565)
chr2 (258-299)||(31068885-31068926)
[»] chr7 (2 HSPs)
chr7 (492-578)||(5104600-5104686)
chr7 (361-401)||(32017039-32017079)
[»] scaffold0393 (1 HSPs)
scaffold0393 (507-567)||(10764-10826)
[»] chr4 (1 HSPs)
chr4 (507-567)||(45144866-45144928)
[»] chr1 (1 HSPs)
chr1 (511-567)||(47192663-47192719)


Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 27186014 - 27185413
Alignment:
Q  1 taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaa-----------gtaattaatagaacatcaccaaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  27186014 taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaatgataatggaagtaattaatagaacatcaccaaa 27185915  T
Q  90 taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaagcatgacattctttctttcaaatatggatggt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185914 taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaagcatgacattctttctttcaaatatggatggt 27185815  T
Q  190 aatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccatttctccacacttaaagcgtgtgagtctaacca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185814 aatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccatttctccacacttaaagcgtgtgagtctaacca 27185715  T
Q  290 ctagactattaaccttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggg 389  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185714 ctagactattaaccttatgggtgttgtggaaagtccggaatgagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggg 27185615  T
Q  390 gttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtttccgtgctgctcttgttgtttgttgctcgggc 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185614 gttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtttccgtgctgctcttgttgtttgttgctcgggc 27185515  T
Q  490 aggtgctctttgggtctttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtttgggtgttctg 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185514 aggtgctctttgggtctttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtttgggtgttctg 27185415  T
Q  590 tg 591  Q
    ||    
T  27185414 tg 27185413  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 27229433 - 27229510
Alignment:
Q  78 aacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattcta 155  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  27229433 aacatcaccaaataattccatgtatcagtcttaatctattgaacatgtgttaattgtgatttgcaggataagattcta 27229510  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 31684777 - 31684816
Alignment:
Q  258 ttctccacacttaaagcgtgtgagtctaaccactagacta 297  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  31684777 ttctccaaacttaaaacgtgtgagtctaaccactagacta 31684816  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 37748111 - 37748060
Alignment:
Q  304 ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaatt 355  Q
    |||||||| |||||||||||||||||| | |||||||| || ||||||||||    
T  37748111 ttatgggtcttgtggaaagtccggaatgacaagatttttaacgggagaaatt 37748060  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 434
Target Start/End: Original strand, 919338 - 919468
Alignment:
Q  304 ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt 403  Q
    ||||||||||||||||| || |||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||    
T  919338 ttatgggtgttgtggaaggttcggaatgagaagacttttaatgggagaaattttgatgtggaagagatagtggaggagatcaaggtgttgtcttggaggt 919437  T
Q  404 ggtttttgagaagaacgaatataccggtgtg 434  Q
    |||||||||| ||||| ||||| || |||||    
T  919438 ggtttttgagtagaactaatatcccagtgtg 919468  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 3175091 - 3175153
Alignment:
Q  507 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 567  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  3175091 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 3175153  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 43406043 - 43405998
Alignment:
Q  252 ctccatttctccacacttaaagcgtgtgagtctaaccactagacta 297  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||||    
T  43406043 ctccacttctccacacataatgtgtgtgagtctaaccactagacta 43405998  T

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Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 304 - 440
Target Start/End: Original strand, 29973641 - 29973777
Alignment:
Q  304 ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt 403  Q
    ||||||||||||||||| || |||||| |||||| ||| ||||| ||||||||||||||||  ||||||||||| ||||| |||| ||||||||| ||||    
T  29973641 ttatgggtgttgtggaaggttcggaatgagaagacttttaatggaagaaattttgaggtgggagagatagtggaggagatgaaggtgttgtcttgaaggt 29973740  T
Q  404 ggtttttgagaagaacgaatataccggtgtgtctctt 440  Q
    |||||||||| ||||| ||||| |||||||| |||||    
T  29973741 ggtttttgagtagaactaatatcccggtgtgcctctt 29973777  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 21647582 - 21647522
Alignment:
Q  507 ttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttga 567  Q
    |||||||||||||||| |||||||||| | |||||||||||| |||||||||| |||||||    
T  21647582 ttcgggagtgaggcagtggtatgcttgactcatgcaagtatatttcagcctcattgtttga 21647522  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 21648751 - 21648703
Alignment:
Q  304 ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaa 352  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  21648751 ttatgggtgttgtggaaagtccggaacgataagattttcaatgggagaa 21648703  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 3934565 - 3934503
Alignment:
Q  507 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 567  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  3934565 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 3934503  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 31068926 - 31068885
Alignment:
Q  258 ttctccacacttaaagcgtgtgagtctaaccactagactatt 299  Q
    |||||||||||||| | |||||| ||||||||||||||||||    
T  31068926 ttctccacacttaatgtgtgtgaatctaaccactagactatt 31068885  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 5104600 - 5104686
Alignment:
Q  492 gtgctctttgggtctttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtt 578  Q
    |||||| |||||| ||||||| |||||||||||||||||| ||||  | ||||||||  || ||||||||||||||  |||||||||    
T  5104600 gtgctccttgggtttttcgggggtgaggcaggggtatgctcgccctttacaagtatatctcggcctcactgtttgataccttgggtt 5104686  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 32017039 - 32017079
Alignment:
Q  361 gtggatgagatagtggaagagatcaaggggttgtcttggag 401  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  32017039 gtggaggagatggtggaagagatcaaggtgttgtcttggag 32017079  T

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Target: scaffold0393 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 10826 - 10764
Alignment:
Q  507 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 567  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  10826 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 10764  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 45144866 - 45144928
Alignment:
Q  507 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 567  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  45144866 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 45144928  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 47192663 - 47192719
Alignment:
Q  511 ggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttga 567  Q
    |||||||| ||||||||||||||| | |||| |||||||||| |||| | |||||||    
T  47192663 ggagtgagacaggggtatgcttgctctatgctagtatacttcggccttattgtttga 47192719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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