View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_6 (Length: 539)
Name: NF0621_low_6
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 27186014 - 27185539
Alignment:
| Q |
1 |
taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaa-----------gtaattaatagaacatcaccaaa |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27186014 |
taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaatgataatggaagtaattaatagaacatcaccaaa |
27185915 |
T |
|
| Q |
90 |
taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaagcatgacattctttctttcaaatatggatggt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185914 |
taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaagcatgacattctttctttcaaatatggatggt |
27185815 |
T |
|
| Q |
190 |
aatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccatttctccacacttaaagcgtgtgagtctaacca |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185814 |
aatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccatttctccacacttaaagcgtgtgagtctaacca |
27185715 |
T |
|
| Q |
290 |
ctagactattaaccttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185714 |
ctagactattaaccttatgggtgttgtggaaagtccggaatgagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggg |
27185615 |
T |
|
| Q |
390 |
gttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtttctgtgct |
465 |
Q |
| |
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| T |
27185614 |
gttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtttccgtgct |
27185539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 27229433 - 27229510
Alignment:
| Q |
78 |
aacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattcta |
155 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27229433 |
aacatcaccaaataattccatgtatcagtcttaatctattgaacatgtgttaattgtgatttgcaggataagattcta |
27229510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 31684777 - 31684816
Alignment:
| Q |
258 |
ttctccacacttaaagcgtgtgagtctaaccactagacta |
297 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
31684777 |
ttctccaaacttaaaacgtgtgagtctaaccactagacta |
31684816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 37748111 - 37748060
Alignment:
| Q |
304 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaatt |
355 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||| || |||||||||| |
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|
| T |
37748111 |
ttatgggtcttgtggaaagtccggaatgacaagatttttaacgggagaaatt |
37748060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 434
Target Start/End: Original strand, 919338 - 919468
Alignment:
| Q |
304 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt |
403 |
Q |
| |
|
||||||||||||||||| || |||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||| |
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| T |
919338 |
ttatgggtgttgtggaaggttcggaatgagaagacttttaatgggagaaattttgatgtggaagagatagtggaggagatcaaggtgttgtcttggaggt |
919437 |
T |
|
| Q |
404 |
ggtttttgagaagaacgaatataccggtgtg |
434 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||| |
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| T |
919438 |
ggtttttgagtagaactaatatcccagtgtg |
919468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 43406043 - 43405998
Alignment:
| Q |
252 |
ctccatttctccacacttaaagcgtgtgagtctaaccactagacta |
297 |
Q |
| |
|
||||| |||||||||| ||| | ||||||||||||||||||||||| |
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|
| T |
43406043 |
ctccacttctccacacataatgtgtgtgagtctaaccactagacta |
43405998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 304 - 440
Target Start/End: Original strand, 29973641 - 29973777
Alignment:
| Q |
304 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt |
403 |
Q |
| |
|
||||||||||||||||| || |||||| |||||| ||| ||||| |||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||| |
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| T |
29973641 |
ttatgggtgttgtggaaggttcggaatgagaagacttttaatggaagaaattttgaggtgggagagatagtggaggagatgaaggtgttgtcttgaaggt |
29973740 |
T |
|
| Q |
404 |
ggtttttgagaagaacgaatataccggtgtgtctctt |
440 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| ||||| |
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|
| T |
29973741 |
ggtttttgagtagaactaatatcccggtgtgcctctt |
29973777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 21648751 - 21648703
Alignment:
| Q |
304 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaa |
352 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
21648751 |
ttatgggtgttgtggaaagtccggaacgataagattttcaatgggagaa |
21648703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 31068926 - 31068885
Alignment:
| Q |
258 |
ttctccacacttaaagcgtgtgagtctaaccactagactatt |
299 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||| |
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|
| T |
31068926 |
ttctccacacttaatgtgtgtgaatctaaccactagactatt |
31068885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 32017039 - 32017079
Alignment:
| Q |
361 |
gtggatgagatagtggaagagatcaaggggttgtcttggag |
401 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||| |
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|
| T |
32017039 |
gtggaggagatggtggaagagatcaaggtgttgtcttggag |
32017079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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