View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0621_low_7 (Length: 498)
Name: NF0621_low_7
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 89 - 469
Target Start/End: Complemental strand, 4134035 - 4133655
Alignment:
| Q |
89 |
gatcctatctcatatttgacggtttttctattatgcaattttagaggtcacaatatagaaaaactctttcttcctttttggtactaatataggactactg |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4134035 |
gatcctatctcatatttgacagtttttctattatgcaattttagaggtcacaatatagaaaaactctttcttcctttttggtactaatatagtactactg |
4133936 |
T |
|
| Q |
189 |
ctgcgagtgcaatatatttgagcatcattcctttttatggcaaaaactctttctcttcaaaccgatggatgaatatggaatacatgacacgtattcgact |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133935 |
ctgcgagtgcaatatatttgagcatcattcctttttatggcaaaaactctttctcttcaaaccgatggatgaatatggaatacatgacacgtattcgact |
4133836 |
T |
|
| Q |
289 |
actccaacaccccgttttctgcattttttccttgcgggtgttgtggcagttataattgtcttgtgcttctggttgttctacgaaatcttcattggatgtt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133835 |
actccaacaccccgttttctgcattttttccttgcgggtgttgtggcagttataattgtcttgtgcttctggttgttctacgaaatcttcattggatgtt |
4133736 |
T |
|
| Q |
389 |
gtcgtgaaagttcacagccagtggcacctcaaccggtgaatgaggtggagatgcttcctgtctgaagccgaagaagatgaa |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133735 |
gtcgtgaaagttcacagccagtggcacctcaaccggtgaatgaggtggagatgcttcctgtctgaagccgaagaagatgaa |
4133655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4134129 - 4134056
Alignment:
| Q |
20 |
taggtttttagtgagtaataataagtcattgattaaaatgaaatgaaaggttaaaatttggtctcaacggatcc |
93 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
4134129 |
taggtttttagtgagtaattataagtcattgattaaaatgaaatgaaaggttaagatttggtgtcaacgaatcc |
4134056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 14826142 - 14826220
Alignment:
| Q |
25 |
ttttagtgagtaataataagtcattgattaaaatgaaatgaaaggttaaaatttggtctcaacggatcctatctcatat |
103 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
14826142 |
ttttagtgagtaattataaaccattgattaaaatgaaatgaaaggttaagatttggtgtcaacggatcctatctcatat |
14826220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 3654075 - 3654027
Alignment:
| Q |
55 |
aaatgaaatgaaaggttaaaatttggtctcaacggatcctatctcatat |
103 |
Q |
| |
|
|||| |||| ||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
3654075 |
aaatcaaatcaaaggatataatttggtgtcaacggatcctatctcatat |
3654027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2977 times since January 2019
Visitors: 3831