View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0621_low_8 (Length: 430)
Name: NF0621_low_8
Description: NF0621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0621_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 23344448 - 23344033
Alignment:
| Q |
7 |
agatccattgtgggtgatggatgaagaagaaagcaagatgttattccctcctattggtgaacaatatttttccttctatgatcaacaagggaacacattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23344448 |
agatccattgtgggtgatggatgaagaagaaagcaagatgttattccctcctattggtgaccaatatttttccttctatgatcaacaagggaacacattt |
23344349 |
T |
|
| Q |
107 |
ctaactggttaatcaagattattcnnnnnnnn-cttcttcaatattttgttcatatgtgtgccatctgtcataagatagcctaattaacatgtatatagc |
205 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23344348 |
ctaactggttaatcaagattattctttttttttcttcttcaatattttgttcatatgtgtaccatctgtcataagatagcctaattaacatgtatatagc |
23344249 |
T |
|
| Q |
206 |
atagtatatgtctttctgaaagggatttgatgcagtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaactt |
305 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344248 |
atagtatatgtctttctgaaagggatttgatgcggtaactgtttctgcagtttttcagtcttgaccgtccgatctaaaccgatgaagatcgtttaaactt |
23344149 |
T |
|
| Q |
306 |
gattttgttattgtgtaatctgaattatccgatctcaaattaacggtcaagattgtttactgcatgtaaatatgtgtttctccttaagcatggctgtaat |
405 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23344148 |
gattttgttattgtgtaatctgaattgtccgatctcaaattaacggtcaagattttttactgcatgtaaatatgtgtttctctttaagcatggctgtaat |
23344049 |
T |
|
| Q |
406 |
aaatctcaagaataat |
421 |
Q |
| |
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||||||||||| |||| |
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| T |
23344048 |
aaatctcaagagtaat |
23344033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 10585750 - 10585699
Alignment:
| Q |
297 |
tttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
348 |
Q |
| |
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|||||| || |||||||||||||||||||||| ||||||||||||||||| |
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| T |
10585750 |
tttaaattttattttgttattgtgtaatctgagccatccgatctcaaattaa |
10585699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 23713503 - 23713456
Alignment:
| Q |
305 |
tgattttgttattgtgtaatctgaattatccgatctcaaattaacggt |
352 |
Q |
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||||||||||||||||||||||||| | ||| |||||| ||||||||| |
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| T |
23713503 |
tgattttgttattgtgtaatctgaactgtccaatctcagattaacggt |
23713456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 32614342 - 32614399
Alignment:
| Q |
291 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaa |
348 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| || |||||| ||||||||| |
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|
| T |
32614342 |
agatcgtttaaagttgattttgttattgtgtaatttgatttgtccgatgtcaaattaa |
32614399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 20770239 - 20770280
Alignment:
| Q |
305 |
tgattttgttattgtgtaatctgaattatccgatctcaaatt |
346 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
20770239 |
tgattttgttattgggtaatctgaatcgtccgatctcaaatt |
20770280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 30241591 - 30241519
Alignment:
| Q |
291 |
agatcgtttaaacttgattttgttattgtgtaatctgaattatccgatctcaaattaacggtcaagattgttta |
364 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| | || ||| ||| ||||| ||||||||| ||||| |
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| T |
30241591 |
agatcgtttaaagttg-ttttgttattgtgtaatctgagatgtctgatttcagattaatggtcaagatcgttta |
30241519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 31681975 - 31682027
Alignment:
| Q |
337 |
atctcaaattaacggtcaagattgtttactgcatgtaaatatgtgtttctcct |
389 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||| |||| ||| |||| |
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|
| T |
31681975 |
atctcaaattaactgtcaatattgtttaatgcatgtaaagatgtctttttcct |
31682027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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