View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_10 (Length: 740)

Name: NF0622_high_10
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_10
NF0622_high_10
[»] chr7 (3 HSPs)
chr7 (11-641)||(45703802-45704429)
chr7 (579-637)||(16883228-16883286)
chr7 (579-637)||(24263051-24263109)
[»] chr6 (4 HSPs)
chr6 (344-458)||(26309025-26309139)
chr6 (579-637)||(33332804-33332862)
chr6 (589-637)||(35204414-35204462)
chr6 (580-637)||(14739301-14739358)
[»] chr3 (5 HSPs)
chr3 (589-637)||(22624330-22624378)
chr3 (579-637)||(8515395-8515453)
chr3 (579-637)||(32478641-32478699)
chr3 (580-637)||(2673949-2674006)
chr3 (589-638)||(54190290-54190339)
[»] scaffold0197 (1 HSPs)
scaffold0197 (579-637)||(16037-16095)
[»] chr8 (2 HSPs)
chr8 (579-637)||(10685992-10686050)
chr8 (579-637)||(35743690-35743748)
[»] chr5 (1 HSPs)
chr5 (579-637)||(31398720-31398778)
[»] chr2 (1 HSPs)
chr2 (579-637)||(19347579-19347637)


Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 11 - 641
Target Start/End: Complemental strand, 45704429 - 45703802
Alignment:
Q  11 cacagagacaaaaaatttagtagggagcaaagagtcaaagtataagggttatgaaaatgcgagtgcattagtggtaactagttcgaaaactgaagtaagt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45704429 cacaaagacaaaaaatttagtagggagcaaagagtcaaagtataatggttatgagaatgcgagtgcattagtggtaactagttcgaaaactgaagtaagt 45704330  T
Q  111 tgggtcatggagaatagatgctcttatcacatgtatcgaaggaataaataactcgagactttagagttgaaataatgtgaaatttttcgcatgagaaata 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  45704329 tgggtcatggagaatagatgctcttatcacatgtatccaaggaatgaataaccggagactttagagctgaaataatgtgaaatttttcgcatgagaaata 45704230  T
Q  211 ataaaacttgtaaggttgaaggtatcagtctgcaagttcctattatatacaatgtgaactatgttgaaaaatttaagcgaaattcgttatccataaagat 310  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45704229 ataaaacttgtaaggttgaaggtatcagtctacaagttcctattata--caatgtgaactatgttgaaaaacttaagcgaaattcgttatccataaagat 45704132  T
Q  311 gttcgtttgattaggctattaccctagtattaagagcatgacatggtgaaaatttcacatggtgcattgacaatttctaaaaataccaaaatgtatggtt 410  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45704131 gttcgtttgattaggctattacgctagtattaagagcatgacatggtgaaaatttcacatggtgcattgacaatttctaaaaataccaaaatgtttggtt 45704032  T
Q  411 tatacatattagatggtcatcttgttattggtcatgcatctctagttaaaacaaagttagggcattttgtttagttgaactagcagaattgtgtgttagg 510  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  45704031 tatacatattagatggtcatcttgttattggtcatgcatctcaagttaaaactaagttggggcattttgtctagttgaactagctgaattgtgtgttagg 45703932  T
Q  511 gaatgttaaattagaggaattagaattttatgataattgcatattaaagaaacaacatacatttaagtaagtgacattcataattctagtagaccttttg 610  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703931 gaatgttaaattagaggaattggaattttatgataattgcatattaaagaaacaacatacatttaagtaagtgacattcataattctagtagaccttttg 45703832  T
Q  611 agtatgttcgttcaaatctttggggtctgac 641  Q
    | |||||||||||||| ||||||||||||||    
T  45703831 aatatgttcgttcaaa-ctttggggtctgac 45703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 16883286 - 16883228
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16883286 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 24263051 - 24263109
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  24263051 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 24263109  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 344 - 458
Target Start/End: Complemental strand, 26309139 - 26309025
Alignment:
Q  344 gagcatgacatggtgaaaatttcacatggtgcattgacaatttctaaaaataccaaaatgtatggtttatacatattagatggtcatcttgttattggtc 443  Q
    |||||||||||| | |||||||||||||||||||| | |||| |||||  |   ||||||||||| |||||||| ||||||| |  | ||||||||||||    
T  26309139 gagcatgacatgttaaaaatttcacatggtgcattaagaattactaaaggtctaaaaatgtatggcttatacattttagatgattttattgttattggtc 26309040  T
Q  444 atgcatctctagtta 458  Q
    |||||| | ||||||    
T  26309039 atgcatttatagtta 26309025  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 33332804 - 33332862
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||| ||||||||||||    
T  33332804 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcagatctttggggtc 33332862  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 35204462 - 35204414
Alignment:
Q  589 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  35204462 cataaatctagtagaccttttgagtatgttcattcggatctttggggtc 35204414  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 14739301 - 14739358
Alignment:
Q  580 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    |||| ||| ||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  14739301 agtggcatgcatcattctagtaggccttttgagtatgtgcattcagatctttggggtc 14739358  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 22624378 - 22624330
Alignment:
Q  589 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  22624378 cataaatctagtaggccttttgagtatgttcattcagatctttggggtc 22624330  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 8515453 - 8515395
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  8515453 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 8515395  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 32478699 - 32478641
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  32478699 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 32478641  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 2673949 - 2674006
Alignment:
Q  580 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    |||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  2673949 agtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 2674006  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 638
Target Start/End: Original strand, 54190290 - 54190339
Alignment:
Q  589 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtct 638  Q
    ||||| |||||||| |||||||||||||||| |||  |||||||||||||    
T  54190290 cataaatctagtaggccttttgagtatgttcattcggatctttggggtct 54190339  T

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Target: scaffold0197 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 16037 - 16095
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16037 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16095  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 10685992 - 10686050
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  10685992 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 10686050  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 35743748 - 35743690
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  35743748 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 35743690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 31398720 - 31398778
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  31398720 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 31398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 637
Target Start/End: Complemental strand, 19347637 - 19347579
Alignment:
Q  579 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 637  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  19347637 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 19347579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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