View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_11 (Length: 698)
Name: NF0622_high_11
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_11 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 203 - 626
Target Start/End: Complemental strand, 6223231 - 6222808
Alignment:
| Q |
203 |
attagattgacaaaaatgaacccaatcaagtcctataagagttgtatatttatcattgttccgaataagaactttaaagtctttgtagcatccattatca |
302 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6223231 |
attagattgacaaaaatgatcccaatcaagtcctataagagttgtatatttatcattgttccgaataagaactttaaagtctttgtagcattcattatca |
6223132 |
T |
|
| Q |
303 |
ctgcaacatgacaacttctcatagaaattatgcttcaaaaagccaccaaatttagatggcaacacctgaaaatagaataattgaaaagtatagttcatta |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6223131 |
ctgcaacatgacaacttctcatagaaattatgcttcaaaaagccaccaaatttagatggcaacacctgaaaatagaataattgaaaagtatagttcatta |
6223032 |
T |
|
| Q |
403 |
tcactgtcacaatgttctggactaaagaattttaagaataaatcatgattgtttattttaaattcttcaatgaattcttttattttctttgtgatttagg |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6223031 |
tcactgtcacaatgttctggactaaagaattttaagaataaatcatgattgtttattttaaattcttcaatgaattcttttattttctttgtgatttagg |
6222932 |
T |
|
| Q |
503 |
cattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgttacaaggatgttcttcttttgcggcagaaattcacgttccagtttat |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222931 |
cattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgttacaaggatgttcttcttttgcggcagaaattcacgttccagtttat |
6222832 |
T |
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| Q |
603 |
tcttcttttgttccatttttagca |
626 |
Q |
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| T |
6222831 |
tcttcttttgttccatttttagca |
6222808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 458 - 626
Target Start/End: Original strand, 32280614 - 32280782
Alignment:
| Q |
458 |
ttttaaattcttcaatgaattcttttattttctttgtgatttaggcattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgtta |
557 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||| |
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| T |
32280614 |
ttttacattcttcaatgaattcttttattttctttgtgatttaggcattgaagtaatatacgaattgcagcagaaactgtcatagagtgattattagtta |
32280713 |
T |
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| Q |
558 |
caaggatgttcttcttttgcggcagaaattcacgttccagtttattcttcttttgttccatttttagca |
626 |
Q |
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| T |
32280714 |
caaggatgttcttcttttgcagcagaaattcacgttccagtttattcttcttttggttcatttctagca |
32280782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 458 - 577
Target Start/End: Original strand, 14837011 - 14837130
Alignment:
| Q |
458 |
ttttaaattcttcaatgaattcttttattttctttgtgatttaggcattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgtta |
557 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14837011 |
ttttacattcttcaatgaattcttttattttctttgtgatttaggcattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgtta |
14837110 |
T |
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| Q |
558 |
caaggatgttcttcttttgc |
577 |
Q |
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| T |
14837111 |
caaggatgttcttcttttgc |
14837130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 34862831 - 34862774
Alignment:
| Q |
111 |
gttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagtc |
168 |
Q |
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||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
34862831 |
gttgtttggaaaatgacattttgatcaatataaataagagattgcaagaaagtgagtc |
34862774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 458 - 577
Target Start/End: Complemental strand, 27964678 - 27964559
Alignment:
| Q |
458 |
ttttaaattcttcaatgaattcttttattttctttgtgatttaggcattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgtta |
557 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964678 |
ttttacattcttgaatgaattcttttattttctttgtgatttaggcattgaagtaatatacagattgcaacagaaactgtcatagagtgattgtctgtta |
27964579 |
T |
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| Q |
558 |
caaggatgttcttcttttgc |
577 |
Q |
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| T |
27964578 |
caaggatgttcttcttttgc |
27964559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 4480389 - 4480450
Alignment:
| Q |
106 |
atgttgttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagt |
167 |
Q |
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||||||||| |||||||||||||||| ||||||| |||| ||| ||||||||||| ||||| |
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| T |
4480389 |
atgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaagaaattgagt |
4480450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 174 - 376
Target Start/End: Complemental strand, 6960431 - 6960222
Alignment:
| Q |
174 |
ttgaagcggatgactcctggctggaagtgattagattgacaaaaatgaacccaatc-------aagtcctataagagttgtatatttatcattgttccga |
266 |
Q |
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|||||| | |||| |||||| || ||||||||||||||||||||| || |||||| ||| ||||||||||| ||||||||||||| |||| || |
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| T |
6960431 |
ttgaagtgaatgattcctggttgaaagtgattagattgacaaaaaagatcccaattcccaattaagccctataagagtagtatatttatcatcgttctga |
6960332 |
T |
|
| Q |
267 |
ataagaactttaaagtctttgtagcatccattatcactgcaacatgacaacttctcatagaaattatgcttcaaaaagccaccaaatttagatggcaaca |
366 |
Q |
| |
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| || |||| ||||||||||||| | ||||||||| || |||||| || ||||| ||||||| |||| | |||| | | ||||||||||||||| | |
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| T |
6960331 |
agaatgacttcaaagtctttgtagtacccattatcattgttacatgataaaatctcagagaaattctgctgtagaaagtcgcaaaatttagatggcaaaa |
6960232 |
T |
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| Q |
367 |
cctgaaaata |
376 |
Q |
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|||||||||| |
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| T |
6960231 |
cctgaaaata |
6960222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 458 - 526
Target Start/End: Complemental strand, 32076007 - 32075938
Alignment:
| Q |
458 |
ttttaaattcttcaatgaattcttttattttcttt-gtgatttaggcattgaagtaatatacagattgca |
526 |
Q |
| |
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||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
32076007 |
ttttacattctttaatgaattcttttattttcttttgtgatttaggctttgaagtaatatacggattgca |
32075938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 32075907 - 32075837
Alignment:
| Q |
528 |
cagaaactgtcatagagtgattgtctgttacaaggatgttcttcttttgcggcagaaattcacgttccagt |
598 |
Q |
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|||||| ||||| ||||||| | || ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32075907 |
cagaaattgtcacagagtgaccgactcttacaaggatgttcttcttttgcggcagaaattcaggttccagt |
32075837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 23521 - 23464
Alignment:
| Q |
109 |
ttgttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagtc |
168 |
Q |
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||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||| |
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|
| T |
23521 |
ttgttgtatggaaaatgacattttgatcaacacagatgag--attgcaagaaagtgagtc |
23464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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