View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_13 (Length: 693)

Name: NF0622_high_13
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_13
NF0622_high_13
[»] chr6 (2 HSPs)
chr6 (119-314)||(4277178-4277373)
chr6 (393-450)||(4276406-4276462)
[»] chr5 (4 HSPs)
chr5 (265-362)||(24091211-24091311)
chr5 (188-263)||(24090931-24091006)
chr5 (500-619)||(25682010-25682128)
chr5 (393-461)||(27202033-27202100)
[»] chr7 (4 HSPs)
chr7 (500-618)||(14074348-14074465)
chr7 (500-618)||(14384376-14384493)
chr7 (500-624)||(18497059-18497182)
chr7 (500-544)||(22334231-22334275)
[»] chr4 (1 HSPs)
chr4 (393-462)||(37578740-37578808)
[»] chr2 (1 HSPs)
chr2 (636-674)||(21503609-21503647)
[»] chr1 (2 HSPs)
chr1 (500-542)||(23506753-23506795)
chr1 (566-624)||(33175629-33175687)
[»] chr8 (1 HSPs)
chr8 (566-618)||(24926796-24926848)
[»] chr3 (1 HSPs)
chr3 (500-544)||(28730553-28730597)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 119 - 314
Target Start/End: Complemental strand, 4277373 - 4277178
Alignment:
Q  119 attctcatagctacacaaaagtataaactttcttatgttaattgtnnnnnnnttaatttgaaggactaagttgtaagttaagtatcataagctaatatga 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4277373 attctcatagctacacaaaagtataaactttcttatcttaattgtaaaaaaattaatttgaaggactaatttgtaagttaagtatcataagctaatatga 4277274  T
Q  219 ttgaaaagctctcataagataaatgctaatccatattaacccaaatgttggacttttccctactttattacaaatcagtattctaactaggcacaa 314  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  4277273 ttgaaaagctctcataagataaaagctaatccatattaacccaaatgttggacttttccctacttgattacaaatcagtattctaacaaggcacaa 4277178  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 4276462 - 4276406
Alignment:
Q  393 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatac 450  Q
    ||||||||| || ||||||||||||| ||||| |||| |||||||| |||||||||||    
T  4276462 atcaaaagatatgccattttgttgaagtcttt-cttgaagatcagtcggaccaaatac 4276406  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 24091211 - 24091311
Alignment:
Q  265 gttggacttttccctactttattacaaatcagtattctaactaggcacaaactagtttttattaac---ttccaaccaaataatgagctgcaacactcaa 361  Q
    ||||||||||||| ||||| || |||||||||||||||||| |||||||| || ||||||||||||   |||||||||||||| ||||||||||||||||    
T  24091211 gttggacttttccttacttgatcacaaatcagtattctaacaaggcacaagctcgtttttattaacttattccaaccaaataaggagctgcaacactcaa 24091310  T
Q  362 g 362  Q
    |    
T  24091311 g 24091311  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 24090931 - 24091006
Alignment:
Q  188 gttgtaagttaagtatcataagctaatatgattgaaaagctctcataagataaatgctaatccatattaacccaaa 263  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| | ||||||||||  |||||||||    
T  24090931 gttgtaagttaagtaacataagctaatttgattgaaaagctctcatcagatataggctaatccatgataacccaaa 24091006  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 619
Target Start/End: Complemental strand, 25682128 - 25682010
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 599  Q
    |||||||||||||| | ||||||||||||| | ||||| || ||| ||  ||||| ||||||||   ||||| || | | |||||||||||||||  |||    
T  25682128 aactcggtaattagaaaaacttattagaaa-gaaaatagaaaagagatgcaaaagaggtttgcagggtttaattgccttacccaatacgagattagattt 25682030  T
Q  600 gtgtgattcaaatgcgtaac 619  Q
    |||||||||||||| |||||    
T  25682029 gtgtgattcaaatgtgtaac 25682010  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 27202033 - 27202100
Alignment:
Q  393 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatacgatgcctggag 461  Q
    ||||||||| |||| || |||||||| |||||  |||||||| ||||||||||||||| || |||||||    
T  27202033 atcaaaagatattctatattgttgaagtcttta-ttgcagattagttggaccaaatacaatacctggag 27202100  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 618
Target Start/End: Complemental strand, 14074465 - 14074348
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 599  Q
    |||||||||||||||| ||||| ||||||| | || || || ||| || ||||||  ||||||||  ||||| || |||||||||| |||||||| ||||    
T  14074465 aactcggtaattagcaaaactttttagaaa-gaaagtagaaaagagatgtaaaagatgtttgcaaggtttaattgccctgcccaatgcgagattaggttt 14074367  T
Q  600 gtgtgattcaaatgcgtaa 618  Q
    |||||||||||||| ||||    
T  14074366 gtgtgattcaaatgtgtaa 14074348  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 618
Target Start/End: Complemental strand, 14384493 - 14384376
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 599  Q
    |||||||||||||||| ||||| ||||||| | || || || ||| || ||||||  ||||||||  ||||| || |||||||||| |||||||| ||||    
T  14384493 aactcggtaattagcaaaactttttagaaa-gaaagtagaaaagagatgtaaaagatgtttgcaaggtttaattgccctgcccaatgcgagattaggttt 14384395  T
Q  600 gtgtgattcaaatgcgtaa 618  Q
    |||||||||||||| ||||    
T  14384394 gtgtgattcaaatgtgtaa 14384376  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 624
Target Start/End: Complemental strand, 18497182 - 18497059
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaaga-gatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgtt 598  Q
    ||||| ||||||||  |||||||||   ||||||||||||||| || ||||||||| |||||| |   ||||| || | |||| ||| |||||||| |||    
T  18497182 aactcagtaattagtggaacttattg--aaagtaaataaaagaagagatttaaaagaggtttgtagggtttaattgccttgcctaatgcgagattaggtt 18497085  T
Q  599 tgtgtgattcaaatgcgtaacgacga 624  Q
     || ||||||| ||||||||||||||    
T  18497084 ggtttgattcatatgcgtaacgacga 18497059  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 22334231 - 22334275
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaagaga 544  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||    
T  22334231 aacttggtaattagctgaatttattagaaaagcaaataaaagaga 22334275  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 37578740 - 37578808
Alignment:
Q  393 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatacgatgcctggagt 462  Q
    ||||||||| |||||||||||||||| || ||||||| ||||| |||| ||||||||| |||||||||||    
T  37578740 atcaaaagatattccattttgttgaagtc-tttcttgaagatcggttgaaccaaatacaatgcctggagt 37578808  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 674
Target Start/End: Original strand, 21503609 - 21503647
Alignment:
Q  636 ccccttccgtctttgttggaattaacttggtaaaacaat 674  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  21503609 ccccttccgtctttgttgaaattaacttagtaaaacaat 21503647  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 542
Target Start/End: Complemental strand, 23506795 - 23506753
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaaga 542  Q
    |||| |||||||||||||| |||||||||||| ||||||||||    
T  23506795 aacttggtaattagcagaatttattagaaaagcaaataaaaga 23506753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 624
Target Start/End: Original strand, 33175629 - 33175687
Alignment:
Q  566 ttttaactgtcctgcccaatacgagattatgtttgtgtgattcaaatgcgtaacgacga 624  Q
    |||||| ||||| || ||||||||||||||||| || ||| ||| ||||||||||||||    
T  33175629 ttttaattgtcccgctcaatacgagattatgttggtttgactcagatgcgtaacgacga 33175687  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 566 - 618
Target Start/End: Original strand, 24926796 - 24926848
Alignment:
Q  566 ttttaactgtcctgcccaatacgagattatgtttgtgtgattcaaatgcgtaa 618  Q
    |||||| ||||||||||||||| |||||| ||| |||||||||| ||| ||||    
T  24926796 ttttaattgtcctgcccaatacaagattaggttggtgtgattcagatgtgtaa 24926848  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 28730553 - 28730597
Alignment:
Q  500 aactcggtaattagcagaacttattagaaaagtaaataaaagaga 544  Q
    |||||||||||||||| || |||||||||||  ||||||||||||    
T  28730553 aactcggtaattagcataatttattagaaaaagaaataaaagaga 28730597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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