View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_22 (Length: 545)
Name: NF0622_high_22
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 116 - 540
Target Start/End: Complemental strand, 40736919 - 40736495
Alignment:
| Q |
116 |
catatgattcggctatatgatggagagaccctcgagtttaatgctttgtgtgctcaaattgagtttctgattcatagaaacatatgaaaacggacatctg |
215 |
Q |
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| T |
40736919 |
catatgattcggctatatgatggagagaccctcgagtttaatgctttgtgtgctcaaattgagtttctgattcatagaaacatatgaaaacggacatctg |
40736820 |
T |
|
| Q |
216 |
caattcaattcattgaatttctctatccataaagttggggacattctttaccagtttgacatacaaataagataggatcatctaatttgaattgaatgca |
315 |
Q |
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| T |
40736819 |
caattcaattcattgaatttctctatccataaagttggggacattctttaccagtttgacatacaaataagataggatcatctaatttgaattgaatgca |
40736720 |
T |
|
| Q |
316 |
acttgtggattacgtaattagttaaccatttaacagtgcttaaaactatatctcaatatagaaagaatatatttaatgaaactactattagaataattac |
415 |
Q |
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| T |
40736719 |
acttgtggattacgtaattagttaaccatttaacagtgcttaaaactatatctcaatatagaaagaatatatttaatgaaactactattagaataattac |
40736620 |
T |
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| Q |
416 |
atgctttaaaaactatatgttccagccaaccacctaaacaactagagtttgaaaggtaatgtgtaccnnnnnnncgataattaggaaggaagttagtttt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40736619 |
atgctttaaaaactatatgttccagccaaccacctaaacaactagagtttgaaaggtaatgtgtaccaaaaaaacgataattaggaaggaagttagtttt |
40736520 |
T |
|
| Q |
516 |
gtttgtattttaatttcatctcact |
540 |
Q |
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| T |
40736519 |
gtttgtattttaatttcatttcact |
40736495 |
T |
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