View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_high_24 (Length: 540)
Name: NF0622_high_24
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 28 - 473
Target Start/End: Complemental strand, 32605008 - 32604551
Alignment:
| Q |
28 |
cattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatata-------------gaatatactagtgcgtgagttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32605008 |
cattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatatatgttggaacactagaatatactagtgcgtgagttga |
32604909 |
T |
|
| Q |
115 |
aaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtgagacacaagggatgtccatttttatga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32604908 |
aaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtgagacacaagagatgtccatttttatga |
32604809 |
T |
|
| Q |
215 |
atggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttacnnnnnnngaaaatgttggtttcaacccatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
32604808 |
atggcatatgacacgatcaacttgatcaacagagacgcgtgccgtcgtttaatttgtcttgggaatttactttttttg-aaatgttggtttcaacccatg |
32604710 |
T |
|
| Q |
315 |
tcaaatctcgtcacacattttgctaacatcattgtacgttcgaccttccattttctatcgtatgtgcaatctgagccatcttgttttttactcttattgt |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32604709 |
tcaaatctcgtcgcacattttgctaacatcattgtgcgttcgaccttccattttctatggtatgtgcaacctgagccatcttgttttttactcttattgt |
32604610 |
T |
|
| Q |
415 |
tttcaacactatgaatagaaatctaaggctccatcccaaatcacatgaaagcttccaag |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32604609 |
tttcaacactatgaatagaaatctaaggctccatcccaaatcacatgaaagcttccaag |
32604551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2347 times since January 2019
Visitors: 3818