View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_27 (Length: 523)
Name: NF0622_high_27
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 34 - 476
Target Start/End: Original strand, 3878617 - 3879073
Alignment:
| Q |
34 |
tacctgatttttccatgttgagagaattgtatatcgatgattctacacttggaaatagtattcaggagatatctgttgttcatgagagattgtgtcatct |
133 |
Q |
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| T |
3878617 |
tacctgattgttccatgttgagagaattgtatatcgatgattctacacttggaaatagtattccggagatatctgttgttcatgagagattgtgtcatct |
3878716 |
T |
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| Q |
134 |
tgaattaataaaatgtcgtgtgacacgaatacaagtcaggtgaatatgcctcaaagtttgactgacacctccgatgataaaataaaaagtgatggtttat |
233 |
Q |
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| T |
3878717 |
tgaattaataaaatgtcgtgggacgcgaatacaagtcaggtgaatatgcctcaaagtttgactgacacctccgatgataaaataaaaagtgatggtttat |
3878816 |
T |
|
| Q |
234 |
tcatttttcaggtgcccacaactta--------------aagagcagtaacatggcacatgttgtacttgattgccctcttctacatgaacttgatattg |
319 |
Q |
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| T |
3878817 |
tcatttttcaggtgcccacaacttaaaactatgtctttgaagagcagtaacatggcacaggttgtacttgattgccctcttctacatgaacttgatattg |
3878916 |
T |
|
| Q |
320 |
gttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcga |
419 |
Q |
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| T |
3878917 |
gttcttgcaacaaacttcctgatgctgttattcgtgctgttgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcga |
3879016 |
T |
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| Q |
420 |
tgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatc |
476 |
Q |
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| T |
3879017 |
tgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatc |
3879073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 34 - 476
Target Start/End: Original strand, 3864610 - 3865076
Alignment:
| Q |
34 |
tacctgatttttccatgttgagagaattgtatatcgatgattctacacttggaaatagtattcaggagatatctgttgttcatgagagattgtgtcatct |
133 |
Q |
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||||||||| | | ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||| | || ||||||||| |||||||||| |
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| T |
3864610 |
tacctgattgtactatgttgagagaattgcatatcaatgattcgacacttggaaatagtattcaagagatatctatcgtccatgagagactgtgtcatct |
3864709 |
T |
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| Q |
134 |
tgaattaataaaatgtcgtgtgacacgaatacaagtcaggtgaatatgcctcaaagtttgactgacac----------ctccgatgataaaataaaaagt |
223 |
Q |
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| T |
3864710 |
tgaattaacaaaatgtcgtgtcatgcgaatacaagtcaggtgaatatgcctcaaacttcgaccgacacttagttgtcactttattgatacgataaaaagt |
3864809 |
T |
|
| Q |
224 |
gatggtttattcatttttcaggtgcccacaacttaaa--------------gagcagtaacatggcacatgttgtacttgattgccctcttctacatgaa |
309 |
Q |
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| T |
3864810 |
gatggtttattcttttttcaggtgcccgcaacttaaaaccatgtcattgaagcgcagtaacatggcacaagttgtgcttaattgccctcttctgcttgaa |
3864909 |
T |
|
| Q |
310 |
cttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgtaactgttctt |
409 |
Q |
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|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
3864910 |
cttgatatgggttcttgccacaaacttcctgatgctgctattcgtgctgctgcaacttcatgccctcaactagtgaaactggacatgcgtaattgttctt |
3865009 |
T |
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| Q |
410 |
gtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatc |
476 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||| |
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| T |
3865010 |
gtgtcagcgatgaaacactgcgtgaaatagcacaacattgtcctaatcttggttttcttgatgcatc |
3865076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 8357532 - 8357452
Alignment:
| Q |
322 |
tcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgtaac |
402 |
Q |
| |
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|||||| ||||||||||| |||||| ||| || | ||||||| ||||||||||| | | |||||| |||||||| ||||| |
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| T |
8357532 |
tcttgccacaaacttccttatgctgctatcggttcggctgcaagttcatgccctctattagtgaagatggacatgtgtaac |
8357452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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