View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_38 (Length: 426)
Name: NF0622_high_38
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 1965879 - 1966291
Alignment:
| Q |
11 |
tctgttgcatttacaattctttcttcacctactattagaaatctgctccatagaatcattagagtgaagtcatacttagggaaataatatgttctgaatt |
110 |
Q |
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| T |
1965879 |
tctgttccatttacaattctttcttcacctactattagaaatctgctccatagtatcattagagtgaagtcatacttagggaaataatatgttctgaatt |
1965978 |
T |
|
| Q |
111 |
tatcttctgagtccttgtgtatatcctttggaatttcctcctgcaaaatttcaacggaaattgtgacatctagtnnnnnnnnttgagcacaaaattaagt |
210 |
Q |
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| T |
1965979 |
tatcttctgagtccttgtgtatatcctttggaatttcctcctgcaaaatttcaacggaaattgtgacatctagtaaaaaaaattgagcacaaaattaagt |
1966078 |
T |
|
| Q |
211 |
ttatgttttgattcatgagtggcttaagcaaagcaatacttataaaattattgcatttaagcaatgcggattgggtctagcagaaggaaccagactctca |
310 |
Q |
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| T |
1966079 |
ttatgttttgattcatgagtggcttaaacaaagcaatacttataaaattattgcatttaagcaatgcggattgggtctagcagaaggaaccagactctta |
1966178 |
T |
|
| Q |
311 |
taatatggtgaaccaaaatttgaattccaacttaaataggtacgcatatttagtgtctgacacgcctcaaatgttatctataacattgtacccaag-ttt |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||| |
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| T |
1966179 |
taatatggtgaaccaaaatttgaattccaactaaaagaggtacgcatatttaatgtctgacacacctcaaatgttatctataatattgtacccaagtttt |
1966278 |
T |
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| Q |
410 |
atcccaagtgaaa |
422 |
Q |
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|||||||||||| |
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| T |
1966279 |
gtcccaagtgaaa |
1966291 |
T |
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