View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_40 (Length: 422)
Name: NF0622_high_40
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 410
Target Start/End: Complemental strand, 26499883 - 26499492
Alignment:
| Q |
30 |
aatatgaagcaatacaacaaccaatcttaacttaat-----------caaattaatcaagtttgtcaaacctgtgaaacacattcaaaaggttacgaacc |
118 |
Q |
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| T |
26499883 |
aatatgaagcaatacaacagccaatcttaacttaataatttcctaaacaaattaatcaagtttgtcaaacctgtgaaacacattcaaaaggttacgaacc |
26499784 |
T |
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| Q |
119 |
aactggatcacatgaagtagggtaaagtgtgagaaaatatggtaaaatatgatcataccttgaatgtgacggaattagcatctcttacaaacctcatgtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26499783 |
aactggatcacatgaagtagggtaaagtgtgagaaaatatggtaaaatatgatcataccttgaatgtgacggaattagcatctcttacaaacctcatgtc |
26499684 |
T |
|
| Q |
219 |
tgaagcaaatatttccactgaaactttccaaacatagagactacttcatnnnnnnnnnttggtaaaccagagggtggtaacttcaaaataggaacatgat |
318 |
Q |
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| T |
26499683 |
tgaagcaaatatttccactgaaactttccaaacatagagactacttcataaaaaaaaattggtaaaccagagggtggtaacttcaaaataggaacatgat |
26499584 |
T |
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| Q |
319 |
gttgactgacattataagtagtcacgtatttgcaagcaggggtggatggatttagactagtttctcaatgtatcaaaattgtaaattgtctc |
410 |
Q |
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| T |
26499583 |
gttgactgacattataagtagtcacgtatttgcaagcaggggtggatggatctagactagtttttcaatgtatcaaaattgtaaattgtctc |
26499492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 47862566 - 47862526
Alignment:
| Q |
60 |
cttaatcaaattaatcaagtttgtcaaacctgtgaaacacat |
101 |
Q |
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| T |
47862566 |
cttaatcaaattaatcaag-ttgtcaaacctatgaaacacat |
47862526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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