View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_44 (Length: 400)
Name: NF0622_high_44
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 27 - 400
Target Start/End: Complemental strand, 37059291 - 37058913
Alignment:
| Q |
27 |
atatgaaacccaaatttcgtgaaaaacaaatgattcttaaaaagaaacaatttgatcttttgaagaatcattttaaattgattatttcttatacataata |
126 |
Q |
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| T |
37059291 |
atatgaaacccaaatttcgtgaaaaacaaatgattcttaaaaagaaacaatttgatcttttgaagaatcattttaaattgattatttcttatacataata |
37059192 |
T |
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| Q |
127 |
gataaaacaattatctattttcaaaatagctttgaataattttaaattgtataacagtattatttttattt------agcattgagaaattaaagtcatt |
220 |
Q |
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| T |
37059191 |
gataaaacaattatctattttcaaaatagctttgaataattttaa-ttgtataacagtattatttttatttttatttagcattgagaaattaaagtcatt |
37059093 |
T |
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| Q |
221 |
agttaatgaaaagttaaaatattcttgtcttaatattgaacgtccattaagacataacaaaaactcaaaaattgatggattatatttatttactgaactg |
320 |
Q |
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| T |
37059092 |
agttaatgaaaagttaaaatattcttgtcttaatattgaacgttcattaagacataacaaaaactcaaaaattgatggattatatttatttactgaactg |
37058993 |
T |
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| Q |
321 |
aacattttaaaataaattatacagttaaaaacttttacaacaattaacatacttaattatgtaaaaataattgattattt |
400 |
Q |
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| T |
37058992 |
aacattttaaaataaattatacagttaaaaacttttacaacaattaacatacttaattatgtaaaaagaattgattattt |
37058913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 1156279 - 1156123
Alignment:
| Q |
87 |
tgaagaatcattttaaattgattatttcttatacataatagataaaacaattatctattttcaaaatagctttgaataattttaaattgtataacagtat |
186 |
Q |
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| T |
1156279 |
tgaagaatcattttaaattgattatttcttatacataatagataaaataactattccatttcaaaataggtttgaacaa-ttgaaattgtataacaatat |
1156181 |
T |
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| Q |
187 |
t-----atttttatttagcattgagaaattaaagtcattagttaatgaaaagttaaaa |
239 |
Q |
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| T |
1156180 |
ttttggatttctatttagcattgagaaattaaggtaatgagataatcaaaagttaaaa |
1156123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 384
Target Start/End: Complemental strand, 1151984 - 1151890
Alignment:
| Q |
291 |
attgatggattatatttatttactgaactgaacattttaaaataaattatacagttaaaaacttttaca-acaattaacatacttaattatgtaa |
384 |
Q |
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| T |
1151984 |
attgatggattatatttatttactgaactaaacatcttaagagaagttatacaagtaaaaaatgatacacccaatcgacatacttaattatgtaa |
1151890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 9643429 - 9643379
Alignment:
| Q |
81 |
atcttttgaagaatcattttaaattgattatttcttatacataatagataa |
131 |
Q |
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| T |
9643429 |
atcttatgaagaatcatttaaaattgattatttcttatacatagtagataa |
9643379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 25171476 - 25171533
Alignment:
| Q |
81 |
atcttttgaagaatcattttaaattgattatttcttatacataatagataaaacaatt |
138 |
Q |
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| T |
25171476 |
atcttttgaagaatcacttaaaattgattatttcttataaataggagataaatcaatt |
25171533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 34568992 - 34569044
Alignment:
| Q |
291 |
attgatggattatatttatttactgaactgaacattttaaaataaattataca |
343 |
Q |
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| T |
34568992 |
attgatggattagatttatttacagaactaaacattttaagagaaattataca |
34569044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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