View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_49 (Length: 373)

Name: NF0622_high_49
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_49
NF0622_high_49
[»] chr7 (5 HSPs)
chr7 (28-330)||(8140500-8140799)
chr7 (28-155)||(2323834-2323961)
chr7 (28-98)||(16184173-16184243)
chr7 (166-239)||(5817219-5817292)
chr7 (166-239)||(28617174-28617247)
[»] chr3 (7 HSPs)
chr3 (28-156)||(24671561-24671683)
chr3 (28-98)||(4578796-4578866)
chr3 (28-150)||(27630651-27630773)
chr3 (28-146)||(34489807-34489925)
chr3 (163-239)||(5366260-5366336)
chr3 (176-264)||(29100210-29100298)
chr3 (166-239)||(4386866-4386939)
[»] scaffold0074 (2 HSPs)
scaffold0074 (28-98)||(27761-27831)
scaffold0074 (28-156)||(29551-29673)
[»] chr6 (2 HSPs)
chr6 (28-98)||(18967589-18967659)
chr6 (166-259)||(1115053-1115145)
[»] chr4 (7 HSPs)
chr4 (28-98)||(10426985-10427055)
chr4 (166-239)||(37781937-37782010)
chr4 (166-234)||(34670614-34670682)
chr4 (284-326)||(5819435-5819477)
chr4 (166-264)||(18912312-18912409)
chr4 (166-211)||(8114687-8114732)
chr4 (167-207)||(6542295-6542334)
[»] chr1 (5 HSPs)
chr1 (166-240)||(918429-918503)
chr1 (28-98)||(46190938-46191006)
chr1 (177-239)||(48382441-48382503)
chr1 (166-239)||(11032269-11032342)
chr1 (166-238)||(32736945-32737017)
[»] chr2 (4 HSPs)
chr2 (28-96)||(42117381-42117449)
chr2 (28-98)||(30397440-30397510)
chr2 (166-239)||(15903839-15903911)
chr2 (166-237)||(28770723-28770794)
[»] scaffold0016 (1 HSPs)
scaffold0016 (166-240)||(102443-102517)
[»] chr5 (3 HSPs)
chr5 (166-243)||(34842674-34842751)
chr5 (166-239)||(6741927-6742000)
chr5 (188-240)||(30899941-30899993)
[»] chr8 (4 HSPs)
chr8 (166-244)||(34477171-34477246)
chr8 (166-255)||(8863575-8863662)
chr8 (166-239)||(9054786-9054859)
chr8 (181-262)||(11771994-11772074)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 330
Target Start/End: Original strand, 8140500 - 8140799
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  8140500 caccatggacatgtgtcttgctacaaaagtggctttaccaatcacaatattgggattggattatcatttggacatattcccttcataatcttgggcttga 8140599  T
Q  128 atcacagtttaagcccatatcattcacatgagtagctagaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatct 227  Q
    |||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  8140600 atcacagtttgagcccatatcattcacatgagtagcttg-aaaatgactagaaattaggatttgttc--tgtgagattgtaagtcaatttcttgtaatct 8140696  T
Q  228 ctttgtatcactcattttcataatggattggaaagctctctatgccataagtaggaaaatttgtccaaattgagaaaacaaatattggtgtgttgtttct 327  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8140697 ctttgtatcactcattttcatagtgcattggaaagctctctatgccataagtaggaaaatttgtccaaattgagaaaacaaatatcggtgtgttgtttct 8140796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 2323834 - 2323961
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    |||||||||||| |||||| |||||||||||| ||||| |||||||||| |||| |||||| |||| |||| |  ||||| || ||| ||||||||||||    
T  2323834 caccatggacatttgtcttgctacaaaagtggctttactaatcacaatagtgggcttggatcatcacttgggccaattccatttatagtcttgggcttgg 2323933  T
Q  128 atcacagtttaagcccatatcattcaca 155  Q
    || | |  || |||||||||||||||||    
T  2323934 ataataacttgagcccatatcattcaca 2323961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 16184173 - 16184243
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  16184173 caccatgtacatgtgtcttgctgcaaaagtggttttaccaatcacaatattgggcttggatcatcatttgg 16184243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 5817219 - 5817292
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| ||||||||||| ||||||||||||||| |  || |  ||| |||||||| | ||||||||||||    
T  5817219 gaaaaatggatagaaattaggttttgttctttgtgagctcttatgcaaatttcttgtaacccctttgtatcact 5817292  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 28617174 - 28617247
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||| | ||||||||||| ||||||||||||||| || ||||  ||| |||||||| | | ||||||||||    
T  28617174 gaaaaataggtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaaccccattgtatcact 28617247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 24671561 - 24671683
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||||| |  |||||      | ||||||||||||    
T  24671561 caccatggacatgtgtcttgctacaaaagtggctttaccaatcacaatattgggcttggatcatcatttgggccaattcc------attcttgggcttgg 24671654  T
Q  128 atcacagtttaagcccatatcattcacat 156  Q
    |||| |  || ||||||||||||||||||    
T  24671655 atcataacttgagcccatatcattcacat 24671683  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 4578866 - 4578796
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  4578866 caccatcgacatgtgtcttgctacaaaagtggctttaccaatcacaatattgggcttggatcatcatttgg 4578796  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 27630651 - 27630773
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    |||| ||||||||| ||||  ||||||| ||| ||||||| | ||||||||||| |||||| ||||||||| || ||| | || |||||| |||||||      
T  27630651 caccttggacatgtatcttgttacaaaattggctttaccagttacaatattgggcttggatcatcatttgggcaaatttcattcataatcatgggcttaa 27630750  T
Q  128 atcacagtttaagcccatatcat 150  Q
    |||||| ||| ||||||||||||    
T  27630751 atcacaatttgagcccatatcat 27630773  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 34489807 - 34489925
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    ||||||||||| |||||||  ||||||||||| ||||| | | |||||||||||||||||| ||||||||  || ||| | || |||||| |||| ||      
T  34489807 caccatggacacgtgtcttgttacaaaagtggctttacgagttacaatattgggattggatcatcatttgagcaaatttcattcataatcatgggtttaa 34489906  T
Q  128 atcacagtttaagcccata 146  Q
    |||||| ||| ||||||||    
T  34489907 atcacaattttagcccata 34489925  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 5366260 - 5366336
Alignment:
Q  163 ctagaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| || ||||||||| ||||| ||| |||||||||| ||||  ||| |||||||| ||||||||||||||    
T  5366260 ctagaaaaaagggtagaaattaagattttttcattgtgagattttaagataatttcttgtaacctctttgtatcact 5366336  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 29100298 - 29100210
Alignment:
Q  176 tagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattttcataatggattggaaagct 264  Q
    ||||||||||| ||||||||||||||| || ||||  ||| |||| ||| ||||||||||||||| || ||||| |||| |||| ||||    
T  29100298 tagaaattagggtttgttctttgtgagtttttaagctaatttcttataacctctttgtatcactctttatcatagtggaatggagagct 29100210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 4386866 - 4386939
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||  ||||||||||| ||||||||||||||| || ||||  ||| |||||||| |  |||||||||||    
T  4386866 gaaaaatgagtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaacccatttgtatcact 4386939  T

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Target: scaffold0074 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 27761 - 27831
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  27761 caccatggacatgtgtcttgctacaaaagtggctttaccaatcacaatattgggcttggatcatcatttgg 27831  T

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Target: scaffold0074; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 29551 - 29673
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttggacatattcccttgataatcttgggcttgg 127  Q
    |||||| |||||||||||| |||||||||||| |||||||||| |||||||||| |||||| ||||||||| |  ||||    |||  ||||||||||||    
T  29551 caccatagacatgtgtcttgctacaaaagtggctttaccaatcgcaatattgggcttggatcatcatttgggccaattc----gat--tcttgggcttgg 29644  T
Q  128 atcacagtttaagcccatatcattcacat 156  Q
    ||||||  || ||||| ||||||||||||    
T  29645 atcacaacttgagcccgtatcattcacat 29673  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 18967659 - 18967589
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||||||||||| ||| |||||||||||  ||||||||||||||||||||| |||||| |||||||||    
T  18967659 caccatggacatgtgccttgctacaaaagtgtctttaccaatcacaatattgggcttggatcatcatttgg 18967589  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 1115053 - 1115145
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattttcataatggattgga 259  Q
    ||||||||| ||||||||||| |||||| ||| |||| || |||||  || |||||||| || ||||||||| || || ||||| |||||||||    
T  1115053 gaaaaatggatagaaattagggtttgttatttttgagcttttaagttgatttcttgtaacctatttgtatcattc-ttatcatagtggattgga 1115145  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 10427055 - 10426985
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||  |||||| |||||||||    
T  10427055 caccatgaacatgtgtcttgctacaaaagtggctttaccaatcacaatattggatttggatcatcatttgg 10426985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 37782010 - 37781937
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| ||||||||| ||||||||||||||||| || ||||  ||| |||||||| ||||||||||||||    
T  37782010 gaaaaatgggtagaaattaagatttgttctttgtgagtttttaagctaatttcttgtaacctctttgtatcact 37781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 34670614 - 34670682
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgta 234  Q
    ||||||||| ||||||||| ||||||||||||||||| |  ||||  ||| |||||||| |||||||||    
T  34670614 gaaaaatggatagaaattatgatttgttctttgtgagctattaagctaatttcttgtaacctctttgta 34670682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 5819477 - 5819435
Alignment:
Q  284 aaatttgtccaaattgagaaaacaaatattggtgtgttgtttc 326  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  5819477 aaatttgtccaaattgaataaacaaatattggtgtgttatttc 5819435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 18912312 - 18912409
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattttcataatggattggaaagct 264  Q
    ||||||||| || || ||||| ||||||||||||||| ||||||   ||| |||||||  || |||||||||||| || ||||| ||||||||| ||||    
T  18912312 gaaaaatggatataatttagggtttgttctttgtgagtttgtaaactaatttcttgtatcctttttgtatcactc-ttatcatagtggattggagagct 18912409  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 8114687 - 8114732
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagt 211  Q
    ||||||||| || |||||||| |||||||||||||||||| |||||    
T  8114687 gaaaaatggatacaaattagggtttgttctttgtgagattataagt 8114732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 6542334 - 6542295
Alignment:
Q  167 aaaaatggctagaaattaggatttgttctttgtgagattgt 207  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  6542334 aaaaatgg-tagaaattaggatttgttctttgtgagcttgt 6542295  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 918429 - 918503
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactc 240  Q
    ||||||||| ||||||||| | ||||||||||||||| |||||||  ||| ||||||||| ||||||||||||||    
T  918429 gaaaaatgggtagaaattatggtttgttctttgtgagtttgtaagataatttcttgtaatatctttgtatcactc 918503  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 46191006 - 46190938
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||||||||||||||| |||||||||||| |||||||||  |||||||||| ||| || |||||||||    
T  46191006 caccatggacatgtgtcttgctacaaaagtggctttaccaat--caatattgggcttgaatcatcatttgg 46190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 48382441 - 48382503
Alignment:
Q  177 agaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    |||||||||| |||| |||||||||  |||||||| ||| |||||||| || |||||||||||    
T  48382441 agaaattagggtttgatctttgtgaacttgtaagttaatttcttgtaacctatttgtatcact 48382503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 11032269 - 11032342
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| ||||||||| | ||||||||||||||| || |||   ||| |||||||| |||||| |||||||    
T  11032269 gaaaaatgggtagaaattatgttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcact 11032342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 32736945 - 32737017
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcac 238  Q
    ||||||||| ||||||||||| |||||||||| |||  || ||||  ||| | |||||| |||||||||||||    
T  32736945 gaaaaatgggtagaaattagggtttgttctttatgaacttttaagctaattttttgtaacctctttgtatcac 32737017  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 42117449 - 42117381
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcattt 96  Q
    |||||||||||||||||||  ||||||||||| |||||||| || ||||||||| |||||| |||||||    
T  42117449 caccatggacatgtgtcttgttacaaaagtggctttaccaaacataatattgggtttggatcatcattt 42117381  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 30397440 - 30397510
Alignment:
Q  28 caccatggacatgtgtcttactacaaaagtggttttaccaatcacaatattgggattggattatcatttgg 98  Q
    ||||||| |||||| |||| ||||||||||||||||| |||||||||||||||  |||||| || ||||||    
T  30397440 caccatgaacatgtatcttgctacaaaagtggttttagcaatcacaatattggatttggatcataatttgg 30397510  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 15903839 - 15903911
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||| | || |||||||| | ||||||||||||    
T  15903839 gaaaaatgggtagaaattagaatttgttctttgtgagcttgtaag-ctatttcttgtaacccctttgtatcact 15903911  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 28770723 - 28770794
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatca 237  Q
    ||||||||| ||||||||||  ||||||||||||||| || ||||  ||| ||||||||| |||||||||||    
T  28770723 gaaaaatgggtagaaattagagtttgttctttgtgagcttttaagctaatttcttgtaatatctttgtatca 28770794  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 102443 - 102517
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactc 240  Q
    ||||||||| ||||||||||| |||||| |||||||| || ||||  ||| |||||||| |||||||||||||||    
T  102443 gaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctctttgtatcactc 102517  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 34842751 - 34842674
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcatt 243  Q
    ||||||||  ||||||||||||| ||||||| ||||| |||||||  ||  |||||||| ||||||||||||||||||    
T  34842751 gaaaaatgagtagaaattaggatatgttcttggtgagcttgtaagataacatcttgtaacctctttgtatcactcatt 34842674  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 6742000 - 6741927
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||  ||||||||||| ||||||||||||||| ||| |||  ||| ||||||||  |||||||||||||    
T  6742000 gaaaaatgagtagaaattaggttttgttctttgtgagtttgcaagctaatttcttgtaacttctttgtatcact 6741927  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30899993 - 30899941
Alignment:
Q  188 tttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactc 240  Q
    ||||||||||||||| ||||| |  ||| |||||||| |||||||||||||||    
T  30899993 tttgttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcactc 30899941  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 34477171 - 34477246
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattt 244  Q
    ||||||||| | ||||||||   |||||||||||||| |||||||| ||| |||| ||| |||||||||||||||||||    
T  34477171 gaaaaatgggtcgaaattag---ttgttctttgtgagtttgtaagttaatttcttttaacctctttgtatcactcattt 34477246  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 8863575 - 8863662
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattttcataatggat 255  Q
    ||||||||| ||||||||| | ||||||||  ||||| || ||||| ||| |||||||| ||||||||||||||| || ||||| |||||    
T  8863575 gaaaaatgggtagaaattaaggtttgttct--gtgagcttttaagttaatttcttgtaacctctttgtatcactctttctcatagtggat 8863662  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 9054786 - 9054859
Alignment:
Q  166 gaaaaatggctagaaattaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcact 239  Q
    ||||||||| ||||||||||  ||||||||||||| | || ||||  ||| |||||||| | ||||||||||||    
T  9054786 gaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttcttgtaaccactttgtatcact 9054859  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 11772074 - 11771994
Alignment:
Q  181 attaggatttgttctttgtgagattgtaagtcaatgtcttgtaatctctttgtatcactcattttcataatggattggaaag 262  Q
    |||||||| ||||||||||||  ||||||   ||| |||| ||| ||||||||||||||| || ||||| ||||||||||||    
T  11772074 attaggatatgttctttgtgaacttgtaaactaatttcttttaacctctttgtatcactc-ttatcatagtggattggaaag 11771994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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