View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_high_52 (Length: 363)
Name: NF0622_high_52
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 71 - 349
Target Start/End: Original strand, 35211730 - 35212008
Alignment:
| Q |
71 |
agttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaa |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211730 |
agttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaa |
35211829 |
T |
|
| Q |
171 |
ggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccatgtattttatctgcccaac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35211830 |
ggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaactgtgagaccatgtattttatctgcccaac |
35211929 |
T |
|
| Q |
271 |
ctgaataaattgcaggtcgaatatcaccaaaaatcagtagtatataaatgaagaaagaaatgaacgtcttattggtttc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35211930 |
ctgaataaattgcaggtcgaatatcaccaaaaatcagtagtatataaatgaagagagaaatgaacgtcttattggtttc |
35212008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 273
Target Start/End: Original strand, 43999617 - 43999812
Alignment:
| Q |
78 |
ggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaaggtatga |
177 |
Q |
| |
|
|||||||| ||||||||||| | |||| |||||||||||||||| || || ||||||||||||||||||| | || |||||| ||||||||||| | |
|
|
| T |
43999617 |
ggtgtttgctcagcagtcttgaggacaatggtattaccacatgctagagctggtccaactttccaagcaaacataagtagaggaaaattccaaggtataa |
43999716 |
T |
|
| Q |
178 |
tttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccatgtattttatctgcccaacctg |
273 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || |||||||||| |||||||| || || || || ||||| ||||||||||||||||||| |
|
|
| T |
43999717 |
tttgtcctgctacaccaattggttcatgcaatgtctggacatgataatctccatcagccgggactgtcagcccatgaattttatctgcccaacctg |
43999812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 273
Target Start/End: Complemental strand, 26895073 - 26894878
Alignment:
| Q |
78 |
ggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaaggtatga |
177 |
Q |
| |
|
||||| |||||||| || |||| ||||| || || ||||| || ||||| || ||||| ||||||||||||| | | ||| |||||||| || |||| |
|
|
| T |
26895073 |
ggtgtctgttcagctgtttttagaacaacggtgttgccacacgccaatgcgggtccaaccttccaagcaaacatgagaagagggaagttccatggaatga |
26894974 |
T |
|
| Q |
178 |
tttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccatgtattttatctgcccaacctg |
273 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||||| || |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||| |
|
|
| T |
26894973 |
tttgaccagcaacgccaatcggttcgtgcaatgtctgcacatgatatggtccatcagctggaactgtgagcccatgaatcttatctgcccaacctg |
26894878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 171 times since January 2019
Visitors: 3833