View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_62 (Length: 305)
Name: NF0622_high_62
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_62 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 35093087 - 35093175
Alignment:
| Q |
39 |
actaacctcacctctttaattacactgggaattaaataaaacattgaaactaacccagcaacgtaatagagata--tgcatagatatgaacac |
129 |
Q |
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| T |
35093087 |
actaacctcacctctttaattacactgggaattaaa----acattgaaactaacccagcaacgtaatagagatatttgcatagatatgaacac |
35093175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 35093243 - 35093348
Alignment:
| Q |
201 |
tttgttgccaacccctcattcatgatcatatttgattt----------catttcttccttcccatgaatacaaatctttcttaatttttgaagactcact |
290 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35093243 |
tttgttgccaacccctcattcatgatcatatttcatttcatttcatttcatttcttccttcccatgaatacaattctttcttaatttttgaagactcact |
35093342 |
T |
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| Q |
291 |
tcatct |
296 |
Q |
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|||||| |
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| T |
35093343 |
tcatct |
35093348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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