View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_73 (Length: 275)
Name: NF0622_high_73
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47179943 - 47179680
Alignment:
| Q |
1 |
gagtttttggtcattttccctatggctctcagcaccagtactcaataatagtttaattctagaagtgctattaaatactacatgtatacagtgttcattt |
100 |
Q |
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| T |
47179943 |
gagtttttggtcattttccctatagctctcagcaccagtactcaataatagtttaattctagaagtactattaaatactacatgtatacagtgttcattt |
47179844 |
T |
|
| Q |
101 |
gcctctacactgttacaaagtacaaataaacaaattcatgtatataaatcaagtcatttcaatcagtatctactatccaaaagagccactgtactgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
47179843 |
gcctctacactgttacaaagtacaaataaacaaattcatgtatataaatcaagtcatttcaatcagtatttactatccaaaagagccactgtattgaata |
47179744 |
T |
|
| Q |
201 |
tatatactaatttggcatcatatacagcatacttgttactgtttgcatgattttggtagttcat |
264 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
47179743 |
tatatactaatttggcatcatatacagcatatttgttactgtttgcatgattttggcagttcat |
47179680 |
T |
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