View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_81 (Length: 252)

Name: NF0622_high_81
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_81
NF0622_high_81
[»] chr1 (7 HSPs)
chr1 (4-205)||(28444025-28444225)
chr1 (1-205)||(49032534-49032737)
chr1 (205-243)||(36233278-36233316)
chr1 (205-243)||(36234032-36234070)
chr1 (92-142)||(32646827-32646877)
chr1 (205-243)||(20191106-20191144)
chr1 (205-243)||(20759076-20759114)
[»] chr4 (10 HSPs)
chr4 (1-205)||(40452074-40452276)
chr4 (1-205)||(633354-633558)
chr4 (38-147)||(38650430-38650538)
chr4 (205-243)||(9399295-9399333)
chr4 (205-243)||(15018316-15018354)
chr4 (205-243)||(15019956-15019994)
chr4 (205-243)||(13518636-13518674)
chr4 (205-243)||(39488826-39488864)
chr4 (205-243)||(46690478-46690516)
chr4 (206-243)||(13518100-13518137)
[»] chr2 (8 HSPs)
chr2 (6-196)||(940669-940858)
chr2 (205-243)||(22299660-22299698)
chr2 (205-243)||(22300572-22300610)
chr2 (205-243)||(24806059-24806097)
chr2 (205-243)||(24806961-24806999)
chr2 (205-243)||(24808817-24808855)
chr2 (204-243)||(31974169-31974208)
chr2 (39-80)||(11807045-11807086)
[»] chr5 (6 HSPs)
chr5 (4-205)||(6703492-6703691)
chr5 (205-243)||(245114-245152)
chr5 (205-243)||(38936687-38936725)
chr5 (205-243)||(29949556-29949595)
chr5 (205-243)||(29951194-29951233)
chr5 (205-243)||(21352763-21352801)
[»] chr8 (9 HSPs)
chr8 (1-148)||(9385343-9385490)
chr8 (36-202)||(18847935-18848100)
chr8 (39-148)||(16996415-16996523)
chr8 (38-147)||(22722143-22722251)
chr8 (45-148)||(15911136-15911238)
chr8 (205-243)||(8366077-8366115)
chr8 (208-243)||(17278350-17278385)
chr8 (205-243)||(17277647-17277685)
chr8 (210-243)||(17277384-17277417)
[»] chr7 (10 HSPs)
chr7 (1-205)||(8524007-8524213)
chr7 (39-148)||(15825833-15825941)
chr7 (204-243)||(24790191-24790230)
chr7 (205-243)||(24790092-24790130)
chr7 (205-243)||(9647611-9647649)
chr7 (205-243)||(40998895-40998933)
chr7 (205-243)||(41000755-41000793)
chr7 (208-243)||(7842649-7842684)
chr7 (206-243)||(9596112-9596149)
chr7 (206-243)||(9647075-9647112)
[»] chr3 (9 HSPs)
chr3 (1-148)||(39687565-39687711)
chr3 (68-148)||(21564043-21564123)
chr3 (204-243)||(5553167-5553206)
chr3 (204-243)||(25531605-25531644)
chr3 (205-243)||(5554467-5554505)
chr3 (205-243)||(23460172-23460210)
chr3 (205-243)||(13041900-13041938)
chr3 (205-243)||(13049977-13050015)
chr3 (205-243)||(47566446-47566484)
[»] chr6 (3 HSPs)
chr6 (36-179)||(2028423-2028564)
chr6 (205-243)||(12037095-12037133)
chr6 (205-243)||(12036986-12037024)
[»] scaffold0096 (1 HSPs)
scaffold0096 (207-243)||(22371-22407)
[»] scaffold0026 (2 HSPs)
scaffold0026 (205-243)||(738-776)
scaffold0026 (205-243)||(86553-86591)
[»] scaffold0021 (2 HSPs)
scaffold0021 (205-243)||(17627-17665)
scaffold0021 (205-243)||(27158-27196)
[»] scaffold0018 (1 HSPs)
scaffold0018 (205-243)||(761-799)
[»] scaffold0359 (1 HSPs)
scaffold0359 (207-243)||(8938-8974)
[»] scaffold0269 (1 HSPs)
scaffold0269 (205-243)||(2043-2081)
[»] scaffold0025 (1 HSPs)
scaffold0025 (205-243)||(54826-54864)
[»] scaffold0013 (1 HSPs)
scaffold0013 (207-243)||(241018-241054)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 28444225 - 28444025
Alignment:
Q  4 ataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgca 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28444225 ataacatattctacgtaaaataaacttcacataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaaacttgca 28444126  T
Q  104 tgccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactgctg 203  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||       |||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  28444125 tgccatgtgtttaccgaaggccggtaaaagagacaactcgtaagg-cccccctggaaatcccccatcctcatcctcgataacatgctctgcatgctgctg 28444027  T
Q  204 ct 205  Q
    ||    
T  28444026 ct 28444025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 49032534 - 49032737
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||    
T  49032534 aacataacatattctacgtaaagtaaacttgacataatagtaaaatatcattaaattaaataaagcaaattatacttactgatttatcgtttcaaaactt 49032633  T
Q  101 gcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||| |||||||||||| |||||||||||||||| |||    
T  49032634 gcatgccacatgtttaccgaagtccggtaaaagagacaactcgtaagg-cccccctggaaagcccctatcctcatcctccataacatgctctgcatgctg 49032732  T
Q  201 ctgct 205  Q
    |||||    
T  49032733 ctgct 49032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 36233278 - 36233316
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36233278 tgatgtgatcctaaaattatctctcttgacaagaataat 36233316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 36234070 - 36234032
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36234070 tgatgtgatcctaaaattatctctcttgacaagaataat 36234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 32646877 - 32646827
Alignment:
Q  92 ccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagacaactc 142  Q
    ||||||||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  32646877 ccaaagcttgcataccacatgtttaccgaagttcggtaaaagcgacaactc 32646827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 20191144 - 20191106
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  20191144 tgatgtgaacctaaaattatctctcttgaaaagaataat 20191106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 20759076 - 20759114
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  20759076 tgatgtgatcctaaaattctctcccttgacaagaataat 20759114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40452276 - 40452074
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  40452276 aacataacatattctacgtaaaataaacttcacataatagtaaaatatcattaaattaaataaattaaattatacttactgttttatcgttccaaagctt 40452177  T
Q  101 gcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactg 200  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||       |||||||||||| ||||||||||| |||||| ||||||||| |||    
T  40452176 gcatgccacgtgtttaccgaaggctggtaaaagagacaactcgtaagg--ccccttggaaagcccccgtcctcatcctccataacaggctctgcatgctg 40452079  T
Q  201 ctgct 205  Q
    |||||    
T  40452078 ctgct 40452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 633354 - 633558
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  633354 aacataacatattctacgtaaaataaacttcacataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 633453  T
Q  101 gcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactg 200  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||       ||||||| ||   ||||||||||| |||||| ||||||||| |||    
T  633454 gcatgccacatgtttaccgaagactggtaaaagagacaactcgtaaggccccctttggaaagaccatgtcctcatcctccataacaggctctgcatgctg 633553  T
Q  201 ctgct 205  Q
    |||||    
T  633554 ctgct 633558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 38650538 - 38650430
Alignment:
Q  38 tagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagac 137  Q
    |||||| |||| | ||||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||    
T  38650538 tagtaacatattagtaaattaaataaagcaa-ttatactcactgctttatcgctccaaaacttgcatgccacgtgtttaccgaagtctggtaaaagcgac 38650440  T
Q  138 aactcgtaag 147  Q
    ||||| ||||    
T  38650439 aactcataag 38650430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 9399333 - 9399295
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9399333 tgatgtgatcctaaaattatctctcttgacaagaataat 9399295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 15018354 - 15018316
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15018354 tgatgtgatcctaaaattatctctcttgacaagaataat 15018316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 15019994 - 15019956
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15019994 tgatgtgatcctaaaattatctctcttgacaagaataat 15019956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 13518674 - 13518636
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13518674 tgatgtgatcctaaaattctctctcttgacaagaataat 13518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 39488864 - 39488826
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  39488864 tgatgtgatcctaaaattctctctcttgaaaagaataat 39488826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 46690478 - 46690516
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  46690478 tgatgtgatcctaaaattctctctcttgataagaataat 46690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 13518137 - 13518100
Alignment:
Q  206 gatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  13518137 gatgtgatcctaaaattctctctcttgacaataataat 13518100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 940858 - 940669
Alignment:
Q  6 aacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatg 105  Q
    |||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  940858 aacatattctacgtaaaataaatttgacataatagtaaaatatcattaaattaaataaagcaaattatacttactgatttatcgttcaaaagcttgcatg 940759  T
Q  106 ccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcat 196  Q
    ||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||| | ||||||||||||||    
T  940758 ccacgtgtttaccgaagtccggtaaaagagacaactcataagg-cccccctggaaagcccccatcctcatcctccaaaacatgctctgcat 940669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 22299660 - 22299698
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22299660 tgatgtgatcctaaaattctctctcttgacaagaataat 22299698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 22300610 - 22300572
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22300610 tgatgtgatcctaaaattctctctcttgacaagaataat 22300572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 24806059 - 24806097
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24806059 tgatgtgatcctaaaattctctctcttgacaagaataat 24806097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 24806999 - 24806961
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24806999 tgatgtgatcctaaaattctctctcttgacaagaataat 24806961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 24808855 - 24808817
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24808855 tgatgtgatcctaaaattctctctcttgacaagaataat 24808817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 31974208 - 31974169
Alignment:
Q  204 ctgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  31974208 ctgatgtgatcctaaaattctctctcttgaaaagaataat 31974169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 11807045 - 11807086
Alignment:
Q  39 agtaaaatatcattaaattaaataaagcaaattatacttact 80  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  11807045 agtaacatgtcattaaataaaataaagcaaattatacttact 11807086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 6703691 - 6703492
Alignment:
Q  4 ataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgca 103  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703691 ataacatattctacataaaataaacttcacataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgca 6703592  T
Q  104 tgccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactgctg 203  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||       ||||||| |||| ||||||||||| |||||| |||||||||  |||||    
T  6703591 tgccacgtgtttatcgaaggccggtaaaagagacaactcgtaagg-cccccctggaaag-ccccgtcctcatcctccataacaagctctgcatgttgctg 6703494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 245152 - 245114
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  245152 tgatgtgatcctaaaattatctctcttgacaagaataat 245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 38936687 - 38936725
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  38936687 tgatgtgatcctaaaattctctctcttgacaagaataat 38936725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 29949556 - 29949595
Alignment:
Q  205 tgatgtgatcctaaaa-ttatctctcttgacaagaataat 243  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29949556 tgatgtgatcctaaaaattatctctcttgacaagaataat 29949595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 29951194 - 29951233
Alignment:
Q  205 tgatgtgatcctaaaa-ttatctctcttgacaagaataat 243  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29951194 tgatgtgatcctaaaaattatctctcttgacaagaataat 29951233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 21352801 - 21352763
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  21352801 tgatgtgatcctaaaattctctctcttgaaaagaataat 21352763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9385490 - 9385343
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  9385490 aacataacatattctacgtaaaataaacttgacataatagtaaaatatcattaaattaaataaagcaaattatacttattgatttatcgttccaaagctt 9385391  T
Q  101 gcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaagg 148  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9385390 gcatgcgacgtgtttaccgaagtccggtaaaagagacaactcgtaagg 9385343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 18847935 - 18848100
Alignment:
Q  36 aatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagag 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  18847935 aatagtaaaatatcattaaattaaataaagcaaattatacttactattttatcgttccaaagcttgcatgccacgtgtttactgaagttcggtaaaagtg 18848034  T
Q  136 acaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcatactgct 202  Q
    ||||||| |||||       || ||| ||||||||||||||||| ||| || ||||||||| |||||    
T  18848035 acaactcataagg-cccccctgaaaaacccccatcctcatcctccataccaagctctgcatgctgct 18848100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 16996523 - 16996415
Alignment:
Q  39 agtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagaca 138  Q
    ||||| |||||||||||||||||||||||| |||||||||||  |||||||  ||||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  16996523 agtaacatatcattaaattaaataaagcaa-ttatacttactactttatcgccccaaatcttgcatgtcacgtgtttaccgaagttcggtaaaagcgaca 16996425  T
Q  139 actcgtaagg 148  Q
    |||| |||||    
T  16996424 actcataagg 16996415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 22722251 - 22722143
Alignment:
Q  38 tagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagac 137  Q
    |||||| |||||||||||||||||||||||| ||| |||||||  | ||||| |||||||||||||||||||||||||||| |||||  |||||||||||    
T  22722251 tagtaacatatcattaaattaaataaagcaa-ttacacttactactctatcgctccaaagcttgcatgccacgtgtttaccaaagtctagtaaaagagac 22722153  T
Q  138 aactcgtaag 147  Q
    ||||| ||||    
T  22722152 aactcataag 22722143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 15911136 - 15911238
Alignment:
Q  45 atatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagacaactcgt 144  Q
    |||||||||||| ||||||||||| |||| ||||||  ||||||| ||||| |||||| ||||||||||||||||||||||| |||||| | |||||| |    
T  15911136 atatcattaaataaaataaagcaa-ttatccttacttgtttatcgctccaatgcttgcttgccacgtgtttaccgaagtccgataaaagcggcaactcat 15911234  T
Q  145 aagg 148  Q
    ||||    
T  15911235 aagg 15911238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 8366077 - 8366115
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8366077 tgatgtgatcctaaaattctctctcttgacaagaataat 8366115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 17278385 - 17278350
Alignment:
Q  208 tgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17278385 tgtgatcctaaaattctctctcttgacaagaataat 17278350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 17277647 - 17277685
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  17277647 tgatgtgatcctaaatttctctctcttgacaagaataat 17277685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 17277384 - 17277417
Alignment:
Q  210 tgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||| ||||||||||||||||||||    
T  17277384 tgatcctaaaattctctctcttgacaagaataat 17277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8524007 - 8524213
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  8524007 aacataacatattctacgtaaaataaacttgacataatagtaaaatatcattaaattaaataaagcaaattatacttattgttttatcgttcgaaagctt 8524106  T
Q  101 gcatg---ccacgtgtttaccgaagtccggtaaaagagacaactcgtaaggnnnnnnntggaaagcccccatcctcatcctctataacatgctctgcata 197  Q
    |||||   ||||||||||||||||||||||||||||||||||||| ||| |       |||||||||||||||||||||||||||||||  ||||||||     
T  8524107 gcatgcgcccacgtgtttaccgaagtccggtaaaagagacaactcataaag-cccccttggaaagcccccatcctcatcctctataacagcctctgcatg 8524205  T
Q  198 ctgctgct 205  Q
     |||||||    
T  8524206 ttgctgct 8524213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 15825833 - 15825941
Alignment:
Q  39 agtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagaca 138  Q
    ||||| ||||||||| |||||||||||||| |||||||||||  ||||||| |||||| |||||||||||| |||||| | ||||  |||||||| ||||    
T  15825833 agtaacatatcattatattaaataaagcaa-ttatacttactactttatcgctccaaaacttgcatgccacatgtttatcaaagtttggtaaaagcgaca 15825931  T
Q  139 actcgtaagg 148  Q
    |||| |||||    
T  15825932 actcataagg 15825941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 24790230 - 24790191
Alignment:
Q  204 ctgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24790230 ctgatgtgatcctaaaattatctctcttgacaagaataat 24790191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 24790092 - 24790130
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24790092 tgatgtgatcctaaaattatctctcttgacaagaataat 24790130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 9647649 - 9647611
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9647649 tgatgtgatcctaaaattctctctcttgacaagaataat 9647611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 40998933 - 40998895
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40998933 tgatgtgatcctaaaattctctctcttgacaagaataat 40998895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 41000793 - 41000755
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  41000793 tgatgtgatcctaaaattctctctcttgacaagaataat 41000755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 7842649 - 7842684
Alignment:
Q  208 tgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7842649 tgtgatcctaaaattctctctcttgacaagaataat 7842684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 9596149 - 9596112
Alignment:
Q  206 gatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  9596149 gatgtgatcctaaaattctctctcttgacaataataat 9596112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 9647112 - 9647075
Alignment:
Q  206 gatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  9647112 gatgtgatcctaaaattctctctcttgacaataataat 9647075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 39687565 - 39687711
Alignment:
Q  1 aacataacatattctacgtaaaataaacttcatataatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 100  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39687565 aacataacgtattctacgtaaaataaacttcacata-tagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagctt 39687663  T
Q  101 gcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaagg 148  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  39687664 gcatgccacgtgtttaccgaaggccggcaaaagagacaactcgtaagg 39687711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 21564123 - 21564043
Alignment:
Q  68 aattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagagacaactcgtaagg 148  Q
    |||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  21564123 aattatacatactattttatcgttccaaagcttgtatgccacgtgtttactgaagttcggtaaaagagacaattcgtaagg 21564043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 5553167 - 5553206
Alignment:
Q  204 ctgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  5553167 ctgatgtgatcctaaaattctctctcttgacaagaataat 5553206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 25531605 - 25531644
Alignment:
Q  204 ctgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  25531605 ctgatgtgatcctaaaattctctctcttgacaagaataat 25531644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 5554505 - 5554467
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5554505 tgatgtgatcctaaaattctctctcttgacaagaataat 5554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 23460172 - 23460210
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23460172 tgatgtgatcctaaaattctctctcttgacaagaataat 23460210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 13041900 - 13041938
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  13041900 tgatatgatcctaaaattctctctcttgacaagaataat 13041938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 13049977 - 13050015
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  13049977 tgatatgatcctaaaattctctctcttgacaagaataat 13050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 47566446 - 47566484
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  47566446 tgatgtgatcctaaaattctctttcttgacaagaataat 47566484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 2028564 - 2028423
Alignment:
Q  36 aatagtaaaatatcattaaattaaataaagcaaattatacttactgttttatcgttccaaagcttgcatgccacgtgtttaccgaagtccggtaaaagag 135  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||  ||| ||| ||||||||||| |||| |||||||||||||||| |||||||||||    
T  2028564 aatagtaaaatatcattaaattaaataaaacaa-ttatacttactactttgtcgctccaaagcttgtatgcgacgtgtttaccgaagttcggtaaaagag 2028466  T
Q  136 acaactcgtaaggnnnnnnntggaaagcccccatcctcatcctc 179  Q
    ||||||| |||||       |||||||||| |||||||||||||    
T  2028465 acaactcataagg-cccccctggaaagccctcatcctcatcctc 2028423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 12037133 - 12037095
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12037133 tgatgtgatcctaaaattctctctcttgacaagaataat 12037095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 12036986 - 12037024
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  12036986 tgatgtgatcctaaaattctctctcttaacaagaataat 12037024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 22371 - 22407
Alignment:
Q  207 atgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  22371 atgtgatcctaaaattatctctcttgacaagaataat 22407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 776 - 738
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  776 tgatgtgatcctaaaattctctctcttgacaagaataat 738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 86553 - 86591
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  86553 tgatgtgatcctaaaattctctcttttgacaagaataat 86591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 17627 - 17665
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17627 tgatgtgatcctaaaattctctctcttgacaagaataat 17665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 27158 - 27196
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  27158 tgatgtgatcctaaaattctctctcttgacaagaataat 27196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 799 - 761
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  799 tgatgtgatcctaaaattctctctcttgacaagaataat 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 8974 - 8938
Alignment:
Q  207 atgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8974 atgtgatcctaaaattctctctcttgacaagaataat 8938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 2081 - 2043
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  2081 tgatgtgatcctaaaattctctctctcgacaagaataat 2043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 54826 - 54864
Alignment:
Q  205 tgatgtgatcctaaaattatctctcttgacaagaataat 243  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  54826 tgatgtgatcctaaagttctctctcttgacaagaataat 54864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 241018 - 241054
Alignment:
Q  207 atgtgatcctaaaattatctctcttgacaagaataat 243  Q
    |||||||||||||||| |||||||| |||||||||||    
T  241018 atgtgatcctaaaattctctctcttaacaagaataat 241054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 323 times since January 2019
Visitors: 3833