View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_high_84 (Length: 251)
Name: NF0622_high_84
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_84 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 19896280 - 19896066
Alignment:
| Q |
30 |
acatcttcttcgtatttttgtataacttcttcccatttgttttccaatactaacaagcggaacgcgtcagctacatatattattgtcatnnnnnnnnnn- |
128 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19896280 |
acatgttcttcgtatttttttataacttcttcccatttctcttccaatactatcaagcggaacgcgttagctacatatattattgtcataaaaaaaaaaa |
19896181 |
T |
|
| Q |
129 |
----ttagtgaaaagaaaagacatacaatattaatattaatgtcacaagtaagaagagacgagtttgtacgtaccatcatgaaggtcataatcataagtt |
224 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||| | |
|
|
| T |
19896180 |
aaaattagtgaaaagaaa-gacatgcaatattaatattaatgtcacaagtaagaagagacgagtttggacgtaccatcttgagggtcataataataaggt |
19896082 |
T |
|
| Q |
225 |
atatcttcatcttcat |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19896081 |
atatcttcatcttcat |
19896066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 20089679 - 20089756
Alignment:
| Q |
30 |
acatcttcttcgtatttttgtataacttcttcccatttgttttccaatactaacaagcggaacgcgtcagctacatat |
107 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| ||||| ||| ||| ||||||| || ||||||||||| |
|
|
| T |
20089679 |
acatgttcttcgtatttttttataacttcttcccatttgtcttccattacaaactcgcggaacccggcagctacatat |
20089756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 20123535 - 20123612
Alignment:
| Q |
30 |
acatcttcttcgtatttttgtataacttcttcccatttgttttccaatactaacaagcggaacgcgtcagctacatat |
107 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||| |||||||| ||||| ||| ||| ||||||| || ||||||||||| |
|
|
| T |
20123535 |
acatgttcttcgtatttatctatcacttctttccatttgtcttccattacaaactcgcggaacacggcagctacatat |
20123612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 463 times since January 2019
Visitors: 3834