View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_high_92 (Length: 228)
Name: NF0622_high_92
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_high_92 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 13032799 - 13032692
Alignment:
| Q |
7 |
catacaaaacttggtatatccctttgctcaattgttttcttttctcaacaattcaaagttatcacaaagttaattcacatataaatgtttcctcacatag |
106 |
Q |
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| T |
13032799 |
catacaaaacttggtatatccctttgctcaattgttttcttttctcaacaattcaaagttatcacaaagttaattcacatataaatgtttcctcacatag |
13032700 |
T |
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| Q |
107 |
atcataca |
114 |
Q |
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| T |
13032699 |
atcataca |
13032692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 13032661 - 13032578
Alignment:
| Q |
145 |
attcgtcactgtcataagaacaagtcaaccattaatttttcaccacacatattccaagcaaatttccatattacatgcatttca |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13032661 |
attcctcactgtcataagaacaagtcaaccattaatttttcaccacacatattccaagcaaatttccatattacatgcatttca |
13032578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 36658500 - 36658434
Alignment:
| Q |
162 |
gaacaagtcaaccattaatttttcaccacacatattccaagcaaatttccatattacatgcatttca |
228 |
Q |
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| T |
36658500 |
gaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttca |
36658434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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