View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_95 (Length: 215)

Name: NF0622_high_95
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_95
NF0622_high_95
[»] chr6 (21 HSPs)
chr6 (16-215)||(26890011-26890210)
chr6 (70-212)||(26966104-26966246)
chr6 (20-212)||(27702342-27702534)
chr6 (70-200)||(27422508-27422638)
chr6 (20-200)||(26627962-26628142)
chr6 (20-200)||(26733939-26734119)
chr6 (72-200)||(26828368-26828496)
chr6 (64-212)||(27714109-27714257)
chr6 (70-212)||(26651110-26651252)
chr6 (70-212)||(26757078-26757220)
chr6 (74-154)||(26640678-26640758)
chr6 (74-154)||(26746644-26746724)
chr6 (40-156)||(31291346-31291462)
chr6 (69-132)||(27652343-27652406)
chr6 (70-150)||(26631460-26631540)
chr6 (70-150)||(26737435-26737515)
chr6 (118-200)||(27652257-27652339)
chr6 (160-212)||(31289406-31289458)
chr6 (78-128)||(26964361-26964411)
chr6 (110-150)||(26807293-26807333)
chr6 (72-212)||(26853623-26853761)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-200)||(64725-64855)
[»] scaffold0349 (1 HSPs)
scaffold0349 (64-212)||(17687-17835)
[»] chr8 (1 HSPs)
chr8 (64-200)||(29270014-29270150)
[»] scaffold0277 (1 HSPs)
scaffold0277 (109-151)||(829-871)
[»] chr4 (2 HSPs)
chr4 (56-200)||(5083071-5083217)
chr4 (55-99)||(18674446-18674490)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 26890011 - 26890210
Alignment:
Q  16 attaaacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgact 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26890011 attaaacatgaagaatcaagtgccgatgaattcagcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttattttttatttgact 26890110  T
Q  116 gtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttctaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  26890111 gtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgtcggttgttctaa 26890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26966104 - 26966246
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||| |||||||||||| | |||| || || ||||||||||||||||||||| || ||||||||||||||||||||||  ||||||||| ||    
T  26966104 gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcga 26966203  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | ||||| ||||||||||||| || ||||||||    
T  26966204 catgtctagagattgcttgcaccacagaatccgttggttgttc 26966246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 27702534 - 27702342
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    |||||| |||||| | | ||||||| |||| ||||||||  || |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||    
T  27702534 aacatggagaatccattcccgatgatttcagcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttttgactgtac 27702435  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||||||||||||| |  |||||||||||||||||||  | ||||||| || | |||||| |||||||  || ||||||||| || ||||||||    
T  27702434 attgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgttc 27702342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 27422638 - 27422508
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||||  | ||||||| ||    
T  27422638 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 27422539  T
Q  170 gatgtctagtggttgctcgcaccacagaatc 200  Q
     |||||||| | ||||||||| || ||||||    
T  27422538 catgtctagagattgctcgcagcatagaatc 27422508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 26627962 - 26628142
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    ||||||||||||| | | ||||||| |||| ||||| || ||| |||| ||||||||||||||||||||||||||  |||| ||| || |||||||||||    
T  26627962 aacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtac 26628061  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||| |  | ||||||||||||| | |  | |||||||  |||||||||| ||||||| |||| ||| ||||    
T  26628062 attgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatc 26628142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 26733939 - 26734119
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    ||||||||||||| | | ||||||| |||| ||||| || ||| |||| ||||||||||||||||||||||||||  |||| ||| || |||||||||||    
T  26733939 aacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtac 26734038  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||| |  | ||||||||||||| | |  | |||||||  |||||||||| ||||||| |||| ||| ||||    
T  26734039 attgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatc 26734119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 26828368 - 26828496
Alignment:
Q  72 aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga 171  Q
    |||||||||||| |||||||||| |||||  || || |||||||||||||||||||||  | ||||||||| |||||||||||   | ||||||| | ||    
T  26828368 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 26828467  T
Q  172 tgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||||||| |||||| ||||    
T  26828468 tgtctagtggttgctcgtaccacaaaatc 26828496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 27714257 - 27714109
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  27714257 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 27714158  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||| || | |||||| |||||||  || | ||||||| || ||||||||    
T  27714157 atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttc 27714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26651110 - 26651252
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||| |||||| ||||||||||||   ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| |  | ||||||| ||    
T  26651110 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26651209  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | || ||||||||||||||||||| ||||||||    
T  26651210 tatgtctagagatttctcgcaccacagaatctgttggttgttc 26651252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26757078 - 26757220
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||| |||||| ||||||||||||   ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| |  | ||||||| ||    
T  26757078 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26757177  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | || ||||||||||||||||||| ||||||||    
T  26757178 tatgtctagagatttctcgcaccacagaatctgttggttgttc 26757220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26640678 - 26640758
Alignment:
Q  74 cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt 154  Q
    |||||||||| |||||||||| |||||| |  || |||||||||||||||||||||||| ||||||||| |||||||||||    
T  26640678 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt 26640758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26746644 - 26746724
Alignment:
Q  74 cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt 154  Q
    |||||||||| |||||||||| |||||| |  || |||||||||||||||||||||||| ||||||||| |||||||||||    
T  26746644 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt 26746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 31291346 - 31291462
Alignment:
Q  40 gatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgt 139  Q
    |||||||||| ||||| || ||| |||| ||||||||||||||||| ||||||||  ||||  || || || || |||  |||| |||||||| ||||||    
T  31291346 gatgaattcagcctgtagtcggtaatttacgcaacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaaccatctgt 31291445  T
Q  140 agtcatctggctatttt 156  Q
    | |||||||||||||||    
T  31291446 aatcatctggctatttt 31291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 27652406 - 27652343
Alignment:
Q  69 cgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaac 132  Q
    |||||||||||||||||||||||||| |||||| || ||  |||||| ||||||||||||||||    
T  27652406 cgcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26631460 - 26631540
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||||||||||||||| || |||||| ||  | || || |||||||| ||||||| | |||||||||||||||||    
T  26631460 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggc 26631540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26737435 - 26737515
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||||||||||||||| || |||||| ||  | || || |||||||| ||||||| | |||||||||||||||||    
T  26737435 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggc 26737515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 27652339 - 27652257
Alignment:
Q  118 acattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||||| |||| | |||||||||||||||  | ||||||| || ||||||||   |||||||||||||| ||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatc 27652257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 31289406 - 31289458
Alignment:
Q  160 tgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||||||| || |||||||||||||||||||| ||||||||| || ||||||||    
T  31289406 tgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttc 31289458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 26964361 - 26964411
Alignment:
Q  78 tctctaaccaaaactaaacatttattttttatttgactgtacattgtcagg 128  Q
    |||||||||||||||| | ||||| ||||| |||| |||||||||||||||    
T  26964361 tctctaaccaaaactacaaatttactttttctttgtctgtacattgtcagg 26964411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 26807293 - 26807333
Alignment:
Q  110 ttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||| |||||||||||| |||||||||| ||||||    
T  26807293 ttgactgtactttgtcaggaaaccatctgtagtcgtctggc 26807333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 26853623 - 26853761
Alignment:
Q  72 aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga 171  Q
    |||||||||||||||||||||||  ||| | || || |||||| || ||||||||| |  | |||||| |||||||||||||||  | ||||||   |||    
T  26853623 aacttttctctaaccaaaactaagaatt-acttgttctttgaccgtgcattgtcagtatcc-atctgtggtcatctggctatttgcattgtcattcaaga 26853720  T
Q  172 tgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    | ||||| |||||| | ||||||| ||||||| || |||||    
T  26853721 tatctaggggttgcgcacaccacaaaatctgttggctgttc 26853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 64725 - 64855
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||||  | ||||||| ||    
T  64725 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 64824  T
Q  170 gatgtctagtggttgctcgcaccacagaatc 200  Q
     |||||||| | ||||||||| || ||||||    
T  64825 catgtctagagattgctcgcagcatagaatc 64855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 17687 - 17835
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  17687 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 17786  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||| || | |||||| |||||||  || | ||||||| || ||||||||    
T  17787 atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttc 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 29270150 - 29270014
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  29270150 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 29270051  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||| || | |||||| |||||||| || |||| ||||    
T  29270050 atgcgacaagtctagaggttgctcacagcacataatc 29270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 871 - 829
Alignment:
Q  109 tttgactgtacattgtcaggaaactatctgtagtcatctggct 151  Q
    |||||| ||||||||||||||||| |||||||||| |||||||    
T  871 tttgacagtacattgtcaggaaaccatctgtagtcgtctggct 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 5083071 - 5083217
Alignment:
Q  56 tgttggttatttgcgcaacttttctct-aacca-aaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctat 153  Q
    ||||||| ||||  ||||||||||||| ||| | ||||||| |||| |||| || ||| ||||||||||| ||| |||| |||||||||  ||||||| |    
T  5083071 tgttggtaatttttgcaacttttctcttaactataaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggcttt 5083170  T
Q  154 ttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||  | ||||||  ||||||||||| ||| ||||   ||||||||||    
T  5083171 ttgcattgtcatacgagatgtctagaggtggctcaatccacagaatc 5083217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 18674490 - 18674446
Alignment:
Q  55 ttgttggttatttgcgcaacttttctctaaccaaaactaaacatt 99  Q
    |||||||| |||| | |||||||||||||||||||||||| ||||    
T  18674490 ttgttggtaatttacacaacttttctctaaccaaaactaagcatt 18674446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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