View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_high_96 (Length: 215)

Name: NF0622_high_96
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_high_96
NF0622_high_96
[»] chr6 (21 HSPs)
chr6 (11-215)||(26890006-26890210)
chr6 (70-212)||(26966104-26966246)
chr6 (20-212)||(27702342-27702534)
chr6 (70-200)||(27422508-27422638)
chr6 (20-200)||(26627962-26628142)
chr6 (20-200)||(26733939-26734119)
chr6 (72-200)||(26828368-26828496)
chr6 (64-212)||(27714109-27714257)
chr6 (70-212)||(26651110-26651252)
chr6 (70-212)||(26757078-26757220)
chr6 (74-154)||(26640678-26640758)
chr6 (74-154)||(26746644-26746724)
chr6 (40-156)||(31291346-31291462)
chr6 (69-132)||(27652343-27652406)
chr6 (70-150)||(26631460-26631540)
chr6 (70-150)||(26737435-26737515)
chr6 (118-200)||(27652257-27652339)
chr6 (160-212)||(31289406-31289458)
chr6 (78-128)||(26964361-26964411)
chr6 (110-150)||(26807293-26807333)
chr6 (72-212)||(26853623-26853761)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-200)||(64725-64855)
[»] scaffold0349 (1 HSPs)
scaffold0349 (64-212)||(17687-17835)
[»] chr8 (1 HSPs)
chr8 (64-200)||(29270014-29270150)
[»] scaffold0277 (1 HSPs)
scaffold0277 (109-151)||(829-871)
[»] chr4 (2 HSPs)
chr4 (56-200)||(5083071-5083217)
chr4 (55-99)||(18674446-18674490)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 26890006 - 26890210
Alignment:
Q  11 ataatattaaacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatt 110  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26890006 ataaaattaaacatgaagaatcaagtgccgatgaattcagcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttattttttatt 26890105  T
Q  111 tgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  26890106 tgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgtcggttgt 26890205  T
Q  211 tctaa 215  Q
    |||||    
T  26890206 tctaa 26890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26966104 - 26966246
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||| |||||||||||| | |||| || || ||||||||||||||||||||| || ||||||||||||||||||||||  ||||||||| ||    
T  26966104 gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcga 26966203  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | ||||| ||||||||||||| || ||||||||    
T  26966204 catgtctagagattgcttgcaccacagaatccgttggttgttc 26966246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 27702534 - 27702342
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    |||||| |||||| | | ||||||| |||| ||||||||  || |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||    
T  27702534 aacatggagaatccattcccgatgatttcagcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttttgactgtac 27702435  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||||||||||||| |  |||||||||||||||||||  | ||||||| || | |||||| |||||||  || ||||||||| || ||||||||    
T  27702434 attgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgttc 27702342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 27422638 - 27422508
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||||  | ||||||| ||    
T  27422638 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 27422539  T
Q  170 gatgtctagtggttgctcgcaccacagaatc 200  Q
     |||||||| | ||||||||| || ||||||    
T  27422538 catgtctagagattgctcgcagcatagaatc 27422508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 26627962 - 26628142
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    ||||||||||||| | | ||||||| |||| ||||| || ||| |||| ||||||||||||||||||||||||||  |||| ||| || |||||||||||    
T  26627962 aacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtac 26628061  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||| |  | ||||||||||||| | |  | |||||||  |||||||||| ||||||| |||| ||| ||||    
T  26628062 attgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatc 26628142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 26733939 - 26734119
Alignment:
Q  20 aacatgaagaatcaagtgccgatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtac 119  Q
    ||||||||||||| | | ||||||| |||| ||||| || ||| |||| ||||||||||||||||||||||||||  |||| ||| || |||||||||||    
T  26733939 aacatgaagaatccattcccgatgatttcagcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtac 26734038  T
Q  120 attgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||| |  | ||||||||||||| | |  | |||||||  |||||||||| ||||||| |||| ||| ||||    
T  26734039 attgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatc 26734119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 26828368 - 26828496
Alignment:
Q  72 aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga 171  Q
    |||||||||||| |||||||||| |||||  || || |||||||||||||||||||||  | ||||||||| |||||||||||   | ||||||| | ||    
T  26828368 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 26828467  T
Q  172 tgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||||||| |||||| ||||    
T  26828468 tgtctagtggttgctcgtaccacaaaatc 26828496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 27714257 - 27714109
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  27714257 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 27714158  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||| || | |||||| |||||||  || | ||||||| || ||||||||    
T  27714157 atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttc 27714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26651110 - 26651252
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||| |||||| ||||||||||||   ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| |  | ||||||| ||    
T  26651110 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26651209  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | || ||||||||||||||||||| ||||||||    
T  26651210 tatgtctagagatttctcgcaccacagaatctgttggttgttc 26651252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 26757078 - 26757220
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||| |||||| ||||||||||||   ||| | || || |||| ||||||||||||||||||| ||||||||||| ||| |||| |  | ||||||| ||    
T  26757078 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcga 26757177  T
Q  170 gatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
     |||||||| | || ||||||||||||||||||| ||||||||    
T  26757178 tatgtctagagatttctcgcaccacagaatctgttggttgttc 26757220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26640678 - 26640758
Alignment:
Q  74 cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt 154  Q
    |||||||||| |||||||||| |||||| |  || |||||||||||||||||||||||| ||||||||| |||||||||||    
T  26640678 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt 26640758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26746644 - 26746724
Alignment:
Q  74 cttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatt 154  Q
    |||||||||| |||||||||| |||||| |  || |||||||||||||||||||||||| ||||||||| |||||||||||    
T  26746644 cttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctggctatt 26746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 31291346 - 31291462
Alignment:
Q  40 gatgaattcaacctgttgttggttatttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgt 139  Q
    |||||||||| ||||| || ||| |||| ||||||||||||||||| ||||||||  ||||  || || || || |||  |||| |||||||| ||||||    
T  31291346 gatgaattcagcctgtagtcggtaatttacgcaacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaaccatctgt 31291445  T
Q  140 agtcatctggctatttt 156  Q
    | |||||||||||||||    
T  31291446 aatcatctggctatttt 31291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 27652406 - 27652343
Alignment:
Q  69 cgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaac 132  Q
    |||||||||||||||||||||||||| |||||| || ||  |||||| ||||||||||||||||    
T  27652406 cgcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26631460 - 26631540
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||||||||||||||| || |||||| ||  | || || |||||||| ||||||| | |||||||||||||||||    
T  26631460 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggc 26631540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26737435 - 26737515
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||||||||||||||| || |||||| ||  | || || |||||||| ||||||| | |||||||||||||||||    
T  26737435 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggc 26737515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 27652339 - 27652257
Alignment:
Q  118 acattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||||||||||||||| |||| | |||||||||||||||  | ||||||| || ||||||||   |||||||||||||| ||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatc 27652257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 31289406 - 31289458
Alignment:
Q  160 tgtcatgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||||||| || |||||||||||||||||||| ||||||||| || ||||||||    
T  31289406 tgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttc 31289458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 26964361 - 26964411
Alignment:
Q  78 tctctaaccaaaactaaacatttattttttatttgactgtacattgtcagg 128  Q
    |||||||||||||||| | ||||| ||||| |||| |||||||||||||||    
T  26964361 tctctaaccaaaactacaaatttactttttctttgtctgtacattgtcagg 26964411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 26807293 - 26807333
Alignment:
Q  110 ttgactgtacattgtcaggaaactatctgtagtcatctggc 150  Q
    |||||||||| |||||||||||| |||||||||| ||||||    
T  26807293 ttgactgtactttgtcaggaaaccatctgtagtcgtctggc 26807333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 26853623 - 26853761
Alignment:
Q  72 aacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggaga 171  Q
    |||||||||||||||||||||||  ||| | || || |||||| || ||||||||| |  | |||||| |||||||||||||||  | ||||||   |||    
T  26853623 aacttttctctaaccaaaactaagaatt-acttgttctttgaccgtgcattgtcagtatcc-atctgtggtcatctggctatttgcattgtcattcaaga 26853720  T
Q  172 tgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    | ||||| |||||| | ||||||| ||||||| || |||||    
T  26853721 tatctaggggttgcgcacaccacaaaatctgttggctgttc 26853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 64725 - 64855
Alignment:
Q  70 gcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatggga 169  Q
    |||||||||||||||| |||||||| |||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||||  | ||||||| ||    
T  64725 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcga 64824  T
Q  170 gatgtctagtggttgctcgcaccacagaatc 200  Q
     |||||||| | ||||||||| || ||||||    
T  64825 catgtctagagattgctcgcagcatagaatc 64855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 17687 - 17835
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  17687 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 17786  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatctgtcggttgttc 212  Q
    ||| || | |||||| |||||||  || | ||||||| || ||||||||    
T  17787 atgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttc 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 29270150 - 29270014
Alignment:
Q  64 atttgcgcaacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtc 163  Q
    |||| ||||||||||||||||||||||||||  ||||  || || |||||||||||||||||||||||| |  |||||||||||||||||||  | ||||    
T  29270150 atttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtc 29270051  T
Q  164 atgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||| || | |||||| |||||||| || |||| ||||    
T  29270050 atgcgacaagtctagaggttgctcacagcacataatc 29270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 871 - 829
Alignment:
Q  109 tttgactgtacattgtcaggaaactatctgtagtcatctggct 151  Q
    |||||| ||||||||||||||||| |||||||||| |||||||    
T  871 tttgacagtacattgtcaggaaaccatctgtagtcgtctggct 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 5083071 - 5083217
Alignment:
Q  56 tgttggttatttgcgcaacttttctct-aacca-aaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctat 153  Q
    ||||||| ||||  ||||||||||||| ||| | ||||||| |||| |||| || ||| ||||||||||| ||| |||| |||||||||  ||||||| |    
T  5083071 tgttggtaatttttgcaacttttctcttaactataaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggcttt 5083170  T
Q  154 ttttactgtcatgggagatgtctagtggttgctcgcaccacagaatc 200  Q
    ||  | ||||||  ||||||||||| ||| ||||   ||||||||||    
T  5083171 ttgcattgtcatacgagatgtctagaggtggctcaatccacagaatc 5083217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 18674490 - 18674446
Alignment:
Q  55 ttgttggttatttgcgcaacttttctctaaccaaaactaaacatt 99  Q
    |||||||| |||| | |||||||||||||||||||||||| ||||    
T  18674490 ttgttggtaatttacacaacttttctctaaccaaaactaagcatt 18674446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 632 times since January 2019
Visitors: 3837