View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_1 (Length: 1165)
Name: NF0622_low_1
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 843; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 66 - 1052
Target Start/End: Original strand, 44144308 - 44145300
Alignment:
| Q |
66 |
agcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcaca--caaaca |
163 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
44144308 |
agcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatacactctcaacctaacatgtgttattcacacacaaaca |
44144407 |
T |
|
| Q |
164 |
acaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagttacttgaattggccggaaccttc |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144408 |
acaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgattaaattgatgatcatagttacttgaattggccggaaccttc |
44144507 |
T |
|
| Q |
264 |
ttcaatattgtcaatttgttatgcccttctaagattgtatttatgttgataaccgtgctgctagtatatggtttctgttgactcgtcctacaatgaaatg |
363 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44144508 |
ttcaatattgtcaatctgttatgcccttctaagattgtatttatgttgataaccatgctgctagtatatggtttctgttgactcatcctacaatgaaatg |
44144607 |
T |
|
| Q |
364 |
aaaatggtagaaacaataaatagtatggtggtactaatataactctagacaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaag |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144608 |
aaaatggtagaaacaataaatagtatggtggtactaatataactctagacaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaag |
44144707 |
T |
|
| Q |
464 |
ggaaagataatactgaacctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaat--- |
560 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144708 |
ggtaagataatactgaatctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaa |
44144807 |
T |
|
| Q |
561 |
-nnnnnnnnnntcgtaaataaacaaatataacatcaggtgttttattgtcaaaaattgcaatcaaatttagactcacttgcaagtttcgaataggaggat |
659 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144808 |
aaaaaaaaaaatcgtaaataaacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggat |
44144907 |
T |
|
| Q |
660 |
tattttaatctttttaacatgtaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccattttaaaaccaa |
759 |
Q |
| |
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||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |
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| T |
44144908 |
tattttaatttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaa |
44145007 |
T |
|
| Q |
760 |
agtcctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagt |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44145008 |
agtcctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagt |
44145107 |
T |
|
| Q |
860 |
ttctgcgtccgagtcaatgatcaaattgtggaaatcttgcatctgaacccgttgcaaacaccatatcaaggccagagattcagccatcagaggagatagt |
959 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
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| T |
44145108 |
ttctgcgtctgagtcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaacaccatatcaaggctagggattcaaccatcagaggagatagt |
44145207 |
T |
|
| Q |
960 |
gtaatctcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaacca |
1052 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44145208 |
gtaatatcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaacca |
44145300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 66 - 266
Target Start/End: Original strand, 40892821 - 40893023
Alignment:
| Q |
66 |
agcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcaca--caaaca |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40892821 |
agcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaaca |
40892920 |
T |
|
| Q |
164 |
acaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagttacttgaattggccggaaccttc |
263 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40892921 |
acaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaaccttc |
40893020 |
T |
|
| Q |
264 |
ttc |
266 |
Q |
| |
|
||| |
|
|
| T |
40893021 |
ttc |
40893023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 40893020 - 40893106
Alignment:
| Q |
289 |
cttctaagattgtatttatgttgataaccgtgctgctagtatatggtttctgttgactcgtcctacaatgaaatgaaaatggtagaaaca |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
40893020 |
cttctaagattgtatttatgttgataaccatgct---agtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaaca |
40893106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 40893100 - 40893155
Alignment:
| Q |
412 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaagggaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
40893100 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaaaaggaa |
40893155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 782 - 1058
Target Start/End: Complemental strand, 44158411 - 44158129
Alignment:
| Q |
782 |
agtatttctttacagtccagaat--tatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttctgcgtccgagtcaatga |
879 |
Q |
| |
|
|||||||| ||| |||||||||| || ||| ||||||||||||||||| ||| || | ||| |||| |||| ||| | |||| | |||| ||||||| |
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|
| T |
44158411 |
agtatttccttaaagtccagaatattaaatgatcaatgtcagcatgctt-cacttgtccaccaaagcagtgttttacaatttcaacatccgtctcaatga |
44158313 |
T |
|
| Q |
880 |
tcaaattgtggaaatcttgcatctgaacccgttgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaatc---tc--ttccttc |
974 |
Q |
| |
|
|||||||||| || | ||| |||||| |||||||||||| | |||||||||| | ||||||||||| |||||||| || ||| || ||||||| |
|
|
| T |
44158312 |
tcaaattgtgaaatttttgttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcgtttcgtttccttc |
44158213 |
T |
|
| Q |
975 |
cttgtagctgc-gaaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccatcatca |
1058 |
Q |
| |
|
|||||||| || |||| ||||| |||| || | ||||||| | ||| ||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
44158212 |
cttgtagccgcaaaaggtcacaggacctacaaagttgcgcac-acaaaaccataaccagtacaatattcaaaacaatcagcatca |
44158129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 4e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 1047 - 1127
Target Start/End: Complemental strand, 49254895 - 49254815
Alignment:
| Q |
1047 |
caaccatcatcattgaagtaatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
1127 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254895 |
caaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
49254815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1047 - 1127
Target Start/End: Complemental strand, 49271563 - 49271483
Alignment:
| Q |
1047 |
caaccatcatcattgaagtaatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
1127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
49271563 |
caaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacat |
49271483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1047 - 1129
Target Start/End: Original strand, 49274681 - 49274763
Alignment:
| Q |
1047 |
caaccatcatcattgaagtaatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatat |
1129 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
49274681 |
caaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacatat |
49274763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1047 - 1127
Target Start/End: Complemental strand, 49267157 - 49267077
Alignment:
| Q |
1047 |
caaccatcatcattgaagtaatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
1127 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||| ||| || |||||||||| |||||||||||||||| |
|
|
| T |
49267157 |
caaccattatcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacat |
49267077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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