View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_100 (Length: 289)
Name: NF0622_low_100
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 11835429 - 11835183
Alignment:
| Q |
29 |
aatatgtgctaagcaaatcaacattcaaatcaaaataagaagcggtggacatgattacgagggtatttcatacatctctaaccaaccctttatcatactt |
128 |
Q |
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| T |
11835429 |
aatatgtgctaagcaagtcaacattcaaatcaaaataagaagcggtggacatgattacgagggtatttcatacatctctaaccaaccctttatcatactt |
11835330 |
T |
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| Q |
129 |
gatatgtttaatctaagaacaatcaatgttgatataaaaaatgaagttgcttatatccaagctggtgctacacttggtgaagtttactacagaatttctg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11835329 |
gatatgtttaatctaagaacaatcaatgttgatataaaaaatgaagttgcttatattcaagctggtgctacacttggtgaagtttactacagaatttctg |
11835230 |
T |
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| Q |
229 |
aaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtc |
275 |
Q |
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| T |
11835229 |
aaaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtc |
11835183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 11820936 - 11821181
Alignment:
| Q |
30 |
atatgtgctaagcaaatcaacattcaaatcaaaataagaagcggtggacatgattacgagggtatttcatacatctctaaccaaccctttatcatacttg |
129 |
Q |
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| T |
11820936 |
atatgtgccaagcaagtcaatattcaaatcaaaatcagaagtggtggacatgattatgagggtatttcttatgtaaatcaatcaccctttatcatacttg |
11821035 |
T |
|
| Q |
130 |
atatgtttaatctaagaacaatcaatgttgatataaaaaatgaagttgcttatatccaagctggtgctacacttggtgaagtttactacagaatttctga |
229 |
Q |
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| T |
11821036 |
atatgtttaatcttagaacaatcaatgttgatataaagaacgaagttgcttacgttcaaggtggtgctacacttggtgaagtttattatagaatttatga |
11821135 |
T |
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| Q |
230 |
aaagagtaaagttcatggatttcctgctggtgtgtgtccaactgtc |
275 |
Q |
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| T |
11821136 |
gaagagtaaggttcatggttttcctgctggtgtgtgtccaactgtc |
11821181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 11917454 - 11917502
Alignment:
| Q |
191 |
tggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaa |
239 |
Q |
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| T |
11917454 |
tggtgcaacacttggtgaagtttactatagaattgctgagaaaagtaaa |
11917502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 259
Target Start/End: Original strand, 38125272 - 38125480
Alignment:
| Q |
51 |
attcaaatcaaaataagaagcggtggacatgattacgagggtatttcatacatctctaaccaaccctttatcatacttgatatgtttaatctaagaacaa |
150 |
Q |
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|||||| ||||| |||| || ||||| ||||| | || ||||| ||||| |||||||||||||||| || || ||||| |||||| | | || | | |
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| T |
38125272 |
attcaactcaaagtaaggagtggtggccatgactttgaaggtatctcatatgtctctaaccaacccttcattattcttgacatgtttcagttcaggaaca |
38125371 |
T |
|
| Q |
151 |
tcaatgttgatataaaaaatgaagttgcttatatccaagctggtgctacacttggtgaagtttactacagaatttctgaaaagagtaaagttcatggatt |
250 |
Q |
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||| |||||| ||| ||||||| |||||| | || ||||||||| ||||||||| ||||| || || || | || ||||||||||||||||| || |
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| T |
38125372 |
tcactgttgacatacaaaatgaggttgctgtggttcagtctggtgctatacttggtgaggtttattataggatatgggagaagagtaaagttcatggctt |
38125471 |
T |
|
| Q |
251 |
tcctgctgg |
259 |
Q |
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||||||||| |
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|
| T |
38125472 |
tcctgctgg |
38125480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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