View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_104 (Length: 284)
Name: NF0622_low_104
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 53592628 - 53592893
Alignment:
| Q |
1 |
acaataaaaattggattgatcacttacaagttacaacaaacaaaagtatatcaagagtagttgggttggg-atcctatgcttctctttacaaagaagaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
53592628 |
acaataaaaattggattgatcacttacaagttacaacaaacaaaagtacatcaagagtagttaggttggacatcctatgcttctctttacaaagaagaat |
53592727 |
T |
|
| Q |
100 |
gcaccaataaaaggggcccgtgagaatttcaaaactcattcttaatttcttactttctctttataaaaccaccataagttccaacatttaacatatcatc |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53592728 |
gcaccaataaaagggggccgtgagaatttcaaaactcattcttaa--------tttctctttataaaaccaccataagtttcaacatttaacatatcatc |
53592819 |
T |
|
| Q |
200 |
tcaacctctctaacaactcatcaccataactcacctcctttactacaatcattcataagcacacatggtttcat |
273 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53592820 |
tcaacctctctaacaactcattaccataactcacctcctttactaaaatcattcataagcacacatggtttcat |
53592893 |
T |
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