View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_108 (Length: 277)
Name: NF0622_low_108
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_108 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 49665359 - 49665622
Alignment:
| Q |
14 |
agagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
113 |
Q |
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| T |
49665359 |
agagtgtccaccttcatttagttgtggatatcttggcaatatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
49665458 |
T |
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| Q |
114 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcaca |
213 |
Q |
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| T |
49665459 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcataataaagggaaatggtttgagtttgaggttgcagctgtatatccttctgagttgcaca |
49665558 |
T |
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| Q |
214 |
gtggtagtgatacttctacttgtgttttcagcgacaataatctctacacactgctgcaaaacaa |
277 |
Q |
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| T |
49665559 |
gtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaa |
49665622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 49708916 - 49709179
Alignment:
| Q |
14 |
agagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
113 |
Q |
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| T |
49708916 |
agagtgtccaccttcatttagttgtggatatcttggcaatatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
49709015 |
T |
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| Q |
114 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcaca |
213 |
Q |
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| T |
49709016 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcataataaagggaaatggtttgagtttgaggttgcagctgtatatccttctgagttgcaca |
49709115 |
T |
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| Q |
214 |
gtggtagtgatacttctacttgtgttttcagcgacaataatctctacacactgctgcaaaacaa |
277 |
Q |
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| T |
49709116 |
gtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaa |
49709179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 49210044 - 49210319
Alignment:
| Q |
2 |
taagtaccagggagagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattg |
101 |
Q |
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| T |
49210044 |
taagtaccaaggagaatgtccaggttcatttagttgtggatatcttggcaatatcagctttcctttcactaccacagaacgccaggactgtggcttattg |
49210143 |
T |
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| Q |
102 |
ccaatacctaactgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctc |
201 |
Q |
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| T |
49210144 |
ccaatacctgactgtgatggtgatccaatgaagcacaaaacgatcaaatatcagaataaagggaaatggtttgagtttgtggttgcatctgtatatcctc |
49210243 |
T |
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| Q |
202 |
ttgattttcacagtggtagtgatacttctacttgtgttttcagcgacaataatctctacacactgctgcaaaacaa |
277 |
Q |
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| T |
49210244 |
ctgggttgcacagtggtagtaatacttctacttgtgtttttagagacattaatctctacaaaatgctgcaaaacaa |
49210319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 18317352 - 18317543
Alignment:
| Q |
53 |
tatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtgatggtgatccaatgaagccc---aaaatgatcaaa |
149 |
Q |
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| T |
18317352 |
tatcagctttcctttcaccaccacagaactccaggattgtgacttattgccaatacctaactgtgatggtgatccattgaagcccaaaaaaatgatctaa |
18317451 |
T |
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| Q |
150 |
tatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcacagtggtagtgatacttctacttgtgtttt |
241 |
Q |
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| T |
18317452 |
tttcagaacaaaggaaaatggtttgagtttgagctttagattgtaagtcctcctgagtatcacagtggtaatgctacttctaattgtgtttt |
18317543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 60 - 266
Target Start/End: Complemental strand, 41686530 - 41686321
Alignment:
| Q |
60 |
tttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtgatggtgatccaatgaagccc---aaaatgatcaaatatcaga |
156 |
Q |
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| T |
41686530 |
tttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtgatggtgatccattgaagcccaaaaaaatgatctaatttcaga |
41686431 |
T |
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| Q |
157 |
ataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcacagtggtagtgatacttctacttgtgttttcagcgacaataatct |
256 |
Q |
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| T |
41686430 |
acaaaggaaaatggtttgagtttgagctttagattgtaagtcctcctgagtatcacagtggtaatgctactcctaattgtgtttttagagacaataatct |
41686331 |
T |
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| Q |
257 |
ctacacactg |
266 |
Q |
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| T |
41686330 |
ctacaaactg |
41686321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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