View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_11 (Length: 876)
Name: NF0622_low_11
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 32 - 861
Target Start/End: Original strand, 34419166 - 34419982
Alignment:
| Q |
32 |
ttcagactagtggaaatatactcccaaatataattcagttatttattatttattcttggtttcaaatggattgaaattgctatgactgttatccagatga |
131 |
Q |
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|||| ||||||||||||||| |||||| || | || | ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
34419166 |
ttcaaactagtggaaatatattcccaattacatttaacttatttactatttattcttggttttaaatggattgaaattgcaatgactgttatccagatga |
34419265 |
T |
|
| Q |
132 |
ataaattaataatttgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttg |
231 |
Q |
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|||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419266 |
ataaattaat---ttgttctttgatatagtgcatttgaggctgaactagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttg |
34419362 |
T |
|
| Q |
232 |
gtcttctttctgttggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaa |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419363 |
gtcttctttctgttggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaa |
34419462 |
T |
|
| Q |
332 |
gacagttaaatcagtttttctttttattgatttatcatgtattagttttagacctatcacctaatttgcacacctttcttctactacttgtttacaggaa |
431 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
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| T |
34419463 |
gaccgttaaatcagtatttctttttattgatttatcatgtattagttttagacctatcgcctaatttgcacacctttcttctactgctggtttacaggaa |
34419562 |
T |
|
| Q |
432 |
acaagaatgggcttttgttgccccataccatcacagaccaaggtgattcctgttacaatgtagttatgtttgtttttatttatagtacatgtttgtctcc |
531 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
34419563 |
acaagaatgggcttttgttgccccataccaccacagaccaaggtgattcctgttacaatgttattatgtttgtttttatttgtagtacatgtttgtc--- |
34419659 |
T |
|
| Q |
532 |
ttccttaaagtataggctgtctagggttaatctgta-tcgctctctgttaaggcattacctgtttttcatctttgctggtgacataataaagctcaacac |
630 |
Q |
| |
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||||||||||||||||||| |||| ||||| |||| | | |||| ||| | ||||||||||||||||||||| || ||| |||||||||||||||||| |
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|
| T |
34419660 |
-tccttaaagtataggctgtttaggattaatttgtaccccccctcttttatgacattacctgtttttcatctttccttgtggcataataaagctcaacac |
34419758 |
T |
|
| Q |
631 |
cagttctgaatcttccaatattgtactgacttatggaacttgatctttttgtcatgtttattgttgaagagcttcagcatttgagaaacagtctacctga |
730 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
34419759 |
cagttctgaattttccgatattgtactgacttatggaac-------ttttgtcatggttattgctgaagagcttcaacatttgagaaacagtctacctga |
34419851 |
T |
|
| Q |
731 |
tcatgttgttgttcagcgtatagaagaaaaattgtctgctctgggaaattgtatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaag |
830 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34419852 |
tcatgtacttgttcagcgtatagaagaaaaattgtctgctctgggaaattgtatagcatgcaatgaccatgttgcccttgcacacgctgatctcgacaag |
34419951 |
T |
|
| Q |
831 |
gtattgtcttattatagataatagccttttt |
861 |
Q |
| |
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|||||| ||| |||||||||||||||||||| |
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|
| T |
34419952 |
gtattgccttgttatagataatagccttttt |
34419982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 655 - 860
Target Start/End: Original strand, 34423976 - 34424181
Alignment:
| Q |
655 |
actgacttatggaacttgatctttttgtcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtataga |
754 |
Q |
| |
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||||||||| |||| ||||| ||||| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||| |
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| T |
34423976 |
actgacttaaggaaattgatatttttttcatggctattgttgaagaacttcaacatttgaaaaacagtctacctgatcgagtttgtgttcagcgcataga |
34424075 |
T |
|
| Q |
755 |
agaaaaattgtctgctctgggaaattgtatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggtattgtcttattatagataatag |
854 |
Q |
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||||| ||| |||||||||||||||||||| ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||| ||||||||||| |||| |
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| T |
34424076 |
agaaagattatctgctctgggaaattgtattgcatgtaatgaccatgtggccctcacgcacaccgatctcgacaaggtattgtgttattatagattatag |
34424175 |
T |
|
| Q |
855 |
cctttt |
860 |
Q |
| |
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| |||| |
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|
| T |
34424176 |
cttttt |
34424181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 34422780 - 34422841
Alignment:
| Q |
421 |
gtttacaggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
482 |
Q |
| |
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|||| ||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
34422780 |
gtttgcaggaaataagaatgggcttctattgccccataccaccacagaccaaggtgattcct |
34422841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 34422601 - 34422713
Alignment:
| Q |
146 |
tgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttggtcttctttctgtt |
245 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||| ||||| ||||||||||| | ||||| ||||||| | | ||||| ||||||||| |||| | || |
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|
| T |
34422601 |
tgttgtttgatacagtgcatttgaggctgagttatcagatgttatccctgtgattaaaacttccattggtggtactcgtattgttggtcgcctttgtatt |
34422700 |
T |
|
| Q |
246 |
ggtaaagtatttt |
258 |
Q |
| |
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|||||| |||||| |
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| T |
34422701 |
ggtaaattatttt |
34422713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 682 - 854
Target Start/End: Original strand, 24346783 - 24346956
Alignment:
| Q |
682 |
tcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtatagaagaaaaattgtctgctctgggaaattg |
781 |
Q |
| |
|
||||| |||||| || ||| ||||| |||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| |||||| |||||||||| |
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| T |
24346783 |
tcatggttattgctgcagaacttcaacatttgagaaacagtctacccgatcaagttgttgttcagaggatagaagaaaaattatctgctttgggaaattg |
24346882 |
T |
|
| Q |
782 |
tatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggta-ttgtcttattatagataatag |
854 |
Q |
| |
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||||||||| ||||||||||| || || | ||||| ||||| |||| |||| |||||||||| ||||| |||| |
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|
| T |
24346883 |
tatagcatgtaatgaccatgtggctctcactcacaccgatcttgacagggtatttgtcttattgtagattatag |
24346956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 24346271 - 24346326
Alignment:
| Q |
427 |
aggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
482 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| |||||| |||||| |||||| |
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|
| T |
24346271 |
aggaaacaagaatggccttctcttgccccataccaccacagatcaaggtaattcct |
24346326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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