View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_116 (Length: 265)
Name: NF0622_low_116
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_116 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 38850152 - 38849945
Alignment:
| Q |
40 |
attaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattcgcacatagtgaattaataaccgcggaaga |
139 |
Q |
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| T |
38850152 |
attaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattcgcaga--gtgaattaataaccgcggaaga |
38850055 |
T |
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| Q |
140 |
caagaatttttagtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcctgatttgttggatatcactactgtcactgtttctt |
239 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38850054 |
caagaatttt-agtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcttgatttgttggatatcactactgtcactgtttctt |
38849956 |
T |
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| Q |
240 |
tgtacctgcat |
250 |
Q |
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||||||||||| |
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| T |
38849955 |
tgtacctgcat |
38849945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 38866092 - 38866143
Alignment:
| Q |
127 |
taaccgcggaagacaagaatt-tttagtcatggttttatcattaaaagcgat |
177 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
38866092 |
taaccacggaagacaagaattatttagtcatggttttatcattaaaaacgat |
38866143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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