View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_117 (Length: 264)
Name: NF0622_low_117
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_117 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 47460750 - 47460514
Alignment:
| Q |
29 |
acttaggaacagtaagnnnnnnngcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacac |
128 |
Q |
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| T |
47460750 |
acttaggaacagtaagaaaaaaagcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacac |
47460651 |
T |
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| Q |
129 |
acctttgcagttcaaaccaggacaagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaa |
228 |
Q |
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| T |
47460650 |
acctttgcagttcaaaccaggacaagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaa |
47460551 |
T |
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| Q |
229 |
c-atatctgattcctaaacatttcatcagccgttttt |
264 |
Q |
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| T |
47460550 |
caatatctgattcctaaacatttcatcagccgttttt |
47460514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 52 - 264
Target Start/End: Complemental strand, 47467393 - 47467181
Alignment:
| Q |
52 |
gcctcacataatgcatcattccacttatcaatcaattctttaggaagcaatttcctgcatgactcaagctccaacacacctttgcagttcaaaccaggac |
151 |
Q |
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| T |
47467393 |
gcctcacacaatgcatcattccacctatcaatcaactcttttggaagcaatgacctgcaagattcaagctctaacacacccttgcagttcaaaccaggac |
47467294 |
T |
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| Q |
152 |
aagacacatttgttatgttgtcttggatttttgttgccacttgtttgacaacacattcagaacaaaatgaatggtaacatatctgattcctaaacatttc |
251 |
Q |
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| T |
47467293 |
aagacacatttgttatgttgtcttggatttttgtagccacttgtttgacaacacattcagaacaaaatgaatgataacatctcaggtttctgaacatttc |
47467194 |
T |
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| Q |
252 |
atcagccgttttt |
264 |
Q |
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| T |
47467193 |
atcagtcgttttt |
47467181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 47455623 - 47455576
Alignment:
| Q |
55 |
tcacataatgcatcattccacttatcaatcaattctttaggaagcaat |
102 |
Q |
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| T |
47455623 |
tcacacaatgcatcattccacttatcaaacaattctttaggaagcaat |
47455576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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