View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_118 (Length: 262)

Name: NF0622_low_118
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_118
NF0622_low_118
[»] chr6 (11 HSPs)
chr6 (117-190)||(25924750-25924823)
chr6 (117-185)||(15328601-15328669)
chr6 (117-185)||(15364771-15364839)
chr6 (117-190)||(34413203-34413276)
chr6 (120-190)||(32784853-32784923)
chr6 (117-201)||(28965715-28965799)
chr6 (116-187)||(29376605-29376676)
chr6 (135-185)||(2881463-2881513)
chr6 (2-38)||(19789114-19789150)
chr6 (3-31)||(27334856-27334884)
chr6 (3-31)||(27395596-27395624)
[»] chr7 (18 HSPs)
chr7 (117-185)||(33881596-33881664)
chr7 (120-185)||(29609768-29609833)
chr7 (119-185)||(16645557-16645623)
chr7 (119-185)||(17619918-17619984)
chr7 (124-185)||(3344981-3345042)
chr7 (117-185)||(17157245-17157313)
chr7 (2-38)||(29609902-29609938)
chr7 (117-184)||(42060769-42060836)
chr7 (2-31)||(15564908-15564937)
chr7 (2-31)||(28548266-28548295)
chr7 (2-31)||(42276088-42276117)
chr7 (117-185)||(20406653-20406721)
chr7 (3-31)||(23389638-23389666)
chr7 (117-185)||(26041422-26041490)
chr7 (117-185)||(27164728-27164796)
chr7 (3-31)||(27704433-27704461)
chr7 (2-38)||(30391156-30391192)
chr7 (4-32)||(30769703-30769731)
[»] chr3 (15 HSPs)
chr3 (117-185)||(40478178-40478246)
chr3 (117-191)||(45295624-45295698)
chr3 (117-184)||(14992187-14992254)
chr3 (117-185)||(42718233-42718299)
chr3 (117-185)||(41877800-41877868)
chr3 (116-191)||(31007234-31007312)
chr3 (117-181)||(25542866-25542930)
chr3 (2-31)||(53021186-53021215)
chr3 (3-31)||(884532-884560)
chr3 (3-31)||(7867756-7867784)
chr3 (2-30)||(28920096-28920124)
chr3 (4-32)||(34145582-34145610)
chr3 (3-31)||(40159883-40159911)
chr3 (3-31)||(45528987-45529015)
chr3 (3-31)||(50559257-50559285)
[»] chr1 (15 HSPs)
chr1 (117-191)||(49189096-49189170)
chr1 (117-185)||(37669510-37669578)
chr1 (118-185)||(5383872-5383939)
chr1 (117-191)||(19920874-19920948)
chr1 (117-190)||(10385526-10385599)
chr1 (3-32)||(23044915-23044944)
chr1 (2-31)||(26585218-26585247)
chr1 (116-185)||(27895652-27895721)
chr1 (4-32)||(1689390-1689418)
chr1 (117-153)||(2257617-2257653)
chr1 (2-38)||(10385424-10385460)
chr1 (3-31)||(18610771-18610799)
chr1 (150-190)||(27563617-27563657)
chr1 (3-31)||(45042259-45042287)
chr1 (116-184)||(50777315-50777383)
[»] scaffold0576 (1 HSPs)
scaffold0576 (117-185)||(9542-9610)
[»] chr4 (20 HSPs)
chr4 (117-185)||(4550446-4550514)
chr4 (117-190)||(51224724-51224797)
chr4 (117-190)||(56025368-56025441)
chr4 (117-185)||(24019862-24019930)
chr4 (3-38)||(54165199-54165234)
chr4 (2-31)||(6290459-6290488)
chr4 (2-31)||(12241055-12241084)
chr4 (2-31)||(29577481-29577510)
chr4 (2-31)||(33093149-33093178)
chr4 (2-31)||(42853936-42853965)
chr4 (2-31)||(50890118-50890147)
chr4 (2-31)||(53662473-53662502)
chr4 (3-31)||(940304-940332)
chr4 (126-182)||(20632542-20632598)
chr4 (3-31)||(31413820-31413848)
chr4 (3-31)||(33820381-33820409)
chr4 (3-31)||(42815402-42815430)
chr4 (3-31)||(44272855-44272883)
chr4 (116-184)||(46844133-46844201)
chr4 (3-31)||(54803373-54803401)
[»] chr8 (12 HSPs)
chr8 (116-191)||(11089688-11089763)
chr8 (117-191)||(43587753-43587827)
chr8 (117-185)||(38504282-38504350)
chr8 (117-185)||(43602314-43602382)
chr8 (117-185)||(6105326-6105394)
chr8 (119-185)||(34972179-34972245)
chr8 (2-31)||(36497658-36497687)
chr8 (139-184)||(45529268-45529313)
chr8 (2-30)||(6440078-6440106)
chr8 (3-31)||(14233678-14233706)
chr8 (142-190)||(36637805-36637853)
chr8 (2-38)||(39884515-39884551)
[»] chr5 (16 HSPs)
chr5 (117-185)||(7077230-7077298)
chr5 (121-220)||(26685807-26685906)
chr5 (121-220)||(26955538-26955637)
chr5 (137-184)||(10372182-10372229)
chr5 (134-184)||(4292912-4292962)
chr5 (117-191)||(30574262-30574336)
chr5 (4-38)||(41192586-41192620)
chr5 (124-184)||(3154535-3154595)
chr5 (3-31)||(5996665-5996693)
chr5 (3-31)||(19844354-19844382)
chr5 (2-38)||(26685688-26685724)
chr5 (2-38)||(26955419-26955455)
chr5 (3-31)||(29803223-29803251)
chr5 (3-31)||(34428158-34428186)
chr5 (3-31)||(35165677-35165705)
chr5 (3-31)||(38919861-38919889)
[»] chr2 (11 HSPs)
chr2 (117-185)||(12175219-12175287)
chr2 (117-185)||(30413623-30413691)
chr2 (134-190)||(6885039-6885095)
chr2 (4-32)||(4319768-4319796)
chr2 (3-31)||(8352833-8352861)
chr2 (3-31)||(18531599-18531627)
chr2 (2-38)||(30413764-30413800)
chr2 (134-190)||(36582385-36582441)
chr2 (117-185)||(38021468-38021535)
chr2 (3-31)||(40115524-40115552)
chr2 (116-184)||(45372573-45372641)
[»] scaffold0172 (2 HSPs)
scaffold0172 (117-185)||(17087-17155)
scaffold0172 (5-38)||(16975-17008)
[»] scaffold0115 (1 HSPs)
scaffold0115 (117-185)||(35384-35452)
[»] scaffold0027 (1 HSPs)
scaffold0027 (116-184)||(5190-5258)
[»] scaffold0514 (1 HSPs)
scaffold0514 (117-185)||(1387-1455)
[»] scaffold0121 (1 HSPs)
scaffold0121 (119-191)||(29897-29969)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 25924823 - 25924750
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||    
T  25924823 accaatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaatgaatgtacaaatatcattgctctt 25924750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 15328601 - 15328669
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  15328601 accaatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 15328669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 15364771 - 15364839
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  15364771 accaatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 15364839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 34413203 - 34413276
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| |||||  ||||| ||||||||||| ||||    
T  34413203 accaatcaaaagagaaaaaatcaaagttgtcaccaaaattgtcattaaattgatgtacaaatatcattgctctt 34413276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 32784853 - 32784923
Alignment:
Q  120 aatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||||||||  |||||||| |||||||||||||||||| ||||| |||||| ||||||||||| ||||    
T  32784853 aatcaaaagagagaaaaacaaaattgtcaccaaaattgtcattaaataaatgtagaaatatcattgctctt 32784923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 28965799 - 28965715
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctttcgctaaatat 201  Q
    |||||||||||||||   |||||||||| |||||||| |||||| |||||| ||||| | |||||||||||| || | |||||||    
T  28965799 accaatcaaaagagagagaaacaaagttatcaccaaagttgtcattaaatggatgtacatatatcattgttcatttgataaatat 28965715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 29376676 - 29376605
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgtt 187  Q
    ||||||| | ||||||  ||||||  ||||||| |||||||||||||||||  ||||| |||||||||||||    
T  29376676 aaccaataagaagagagcaaaacatggttgtcatcaaaattgtcactaaatagatgtacaaatatcattgtt 29376605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 2881463 - 2881513
Alignment:
Q  135 aaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||||||| |||||| |||||| ||||  |||||||||||    
T  2881463 aaacaaagttgtcaccaaagttgtcattaaatggatgtccaaatatcattg 2881513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 19789150 - 19789114
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||| |||||| |||||    
T  19789150 taagagaaatgatatttgtacaaccattttattacaa 19789114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 27334856 - 27334884
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  27334856 aagagaaatgatatttgtacaactatttt 27334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 27395596 - 27395624
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  27395596 aagagaaatgatatttgtacaactatttt 27395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 33881664 - 33881596
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  33881664 accaatcaaaagagaggaaaacaaagttgtcaccaaaattatcattaaatgaatgtacaaatatcattg 33881596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 29609833 - 29609768
Alignment:
Q  120 aatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||  ||||| |||||||||||    
T  29609833 aatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaattgatgtacaaatatcattg 29609768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 16645623 - 16645557
Alignment:
Q  119 caatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||| ||||||||| |||||| |||| || ||| |||||||||| | |||||||||||    
T  16645623 caatcaaaagagaggaaaacaaaattgtcaacaaagttatcattaaatgaatggacaaatatcattg 16645557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 17619984 - 17619918
Alignment:
Q  119 caatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||| ||||||||| |||||| |||| || ||| |||||||||| | |||||||||||    
T  17619984 caatcaaaagagaggaaaacaaaattgtcaacaaagttatcattaaatgaatggacaaatatcattg 17619918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 3344981 - 3345042
Alignment:
Q  124 aaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||  ||||||| ||||||  ||||||||||| |||||||||||| |||||||||||    
T  3344981 aaaagagataaaaacaaggttgtcttcaaaattgtcattaaatgaatgtacaaatatcattg 3345042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 17157245 - 17157313
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||  ||| ||||||| |||||||| |||||| |||||  ||||| |||||||||||    
T  17157245 accaatcaaaagagagaaaagcaaagttatcaccaaagttgtcattaaattgatgtacaaatatcattg 17157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 29609938 - 29609902
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||| ||||||||||||||||||||||||||    
T  29609938 taagagaaatcatatttgtacaactattttactacaa 29609902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 42060769 - 42060836
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    |||||||||||||||  ||  |||||||||||||||| |||||| |||||  ||||| ||||||||||    
T  42060769 accaatcaaaagagagaaaggcaaagttgtcaccaaagttgtcattaaatagatgtacaaatatcatt 42060836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 15564908 - 15564937
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  15564908 taagagaaatgatatttgtacaactatttt 15564937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 28548295 - 28548266
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  28548295 taagagaaatgatatttgtacaactatttt 28548266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 42276088 - 42276117
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  42276088 taagagaaatgatatttgtacaactatttt 42276117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 20406653 - 20406721
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||| ||||||||| |||||||||||||| || || |||| | |||||| ||||  |||||||||||    
T  20406653 accaataaaaagagaaaaaaacaaagttgtcgccgaagttgttattaaatggatgtccaaatatcattg 20406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 23389666 - 23389638
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  23389666 aagagaaatgatatttgtacaactatttt 23389638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 26041422 - 26041490
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||| | ||||||  |||||||||||||||| ||| ||||||  ||||| ||||| |||||||||||    
T  26041422 accaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaatggatgtacaaatatcattg 26041490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 27164796 - 27164728
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||| | ||||||  |||||||||||||||| ||||||||||   |||| ||||| |||||||||||    
T  27164796 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattg 27164728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 27704433 - 27704461
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  27704433 aagagaaatgatatttgtacaactatttt 27704461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30391156 - 30391192
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||| |||||||||| |||||    
T  30391156 taagagaaatgatatttgtataactattttattacaa 30391192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 30769731 - 30769703
Alignment:
Q  4 agagaaatgatatttgtacaactatttta 32  Q
    |||||||||||||||||||||||||||||    
T  30769731 agagaaatgatatttgtacaactatttta 30769703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 40478246 - 40478178
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  40478246 accaatcaaaagagaggaaaacaaagttgtcaccaaaattgtcattaaatggatgtacaaatatcattg 40478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 45295698 - 45295624
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    ||||||||||||||| |||||||||||||||||||||  ||||| |||||| ||||| ||||||||||| |||||    
T  45295698 accaatcaaaagagaggaaaacaaagttgtcaccaaagctgtcattaaatggatgtacaaatatcattgctcttt 45295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 14992187 - 14992254
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||| ||||| ||||||||||    
T  14992187 accaatcaaaaaagaataaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcatt 14992254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 42718233 - 42718299
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  42718233 accaatcaaaagagag--aaacaaagttgtcaccaaaattgtcattaaatgaatgtacatatatcattg 42718299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 41877800 - 41877868
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||| |||  |||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  41877800 accaatcaaaaaagagaaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 41877868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 31007312 - 31007234
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtc---accaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||||||||||||||| |||||||||||||||   |||||| || ||| |||||||||||| |||||| |||| |||||    
T  31007312 aaccaatcaaaagagaggaaaacaaagttgtcaccaccaaagttatcattaaatgaatgtacaaatatgattgctcttt 31007234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 25542930 - 25542866
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatc 181  Q
    ||||||||||||||| |||| |||||||||||| ||| || ||| |||||| ||||| |||||||    
T  25542930 accaatcaaaagagaggaaaccaaagttgtcactaaagttatcattaaatggatgtacaaatatc 25542866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 53021186 - 53021215
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  53021186 taagagaaatgatatttgtacaactatttt 53021215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 884532 - 884560
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  884532 aagagaaatgatatttgtacaactatttt 884560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 7867784 - 7867756
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  7867784 aagagaaatgatatttgtacaactatttt 7867756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 28920124 - 28920096
Alignment:
Q  2 taagagaaatgatatttgtacaactattt 30  Q
    |||||||||||||||||||||||||||||    
T  28920124 taagagaaatgatatttgtacaactattt 28920096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 34145610 - 34145582
Alignment:
Q  4 agagaaatgatatttgtacaactatttta 32  Q
    |||||||||||||||||||||||||||||    
T  34145610 agagaaatgatatttgtacaactatttta 34145582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 40159911 - 40159883
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  40159911 aagagaaatgatatttgtacaactatttt 40159883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 45529015 - 45528987
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  45529015 aagagaaatgatatttgtacaactatttt 45528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 50559285 - 50559257
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  50559285 aagagaaatgatatttgtacaactatttt 50559257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 49189170 - 49189096
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||||    
T  49189170 accaatcaaaagagaggaaaacaaaattgtcaccaaagttgtcattaaatggatgtacaaatatcattgttcttt 49189096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 37669510 - 37669578
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||| ||| || ||||||||||||||| ||||| ||| |||||||||||| |||||||||||    
T  37669510 accaatcaaaaaagaggagaacaaagttgtcaccgaaattatcattaaatgaatgtacaaatatcattg 37669578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 5383872 - 5383939
Alignment:
Q  118 ccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||  |||||||||||||||||||| |||| | |||||| ||||| |||||||||||    
T  5383872 ccaatcaaaagagagaaaaacaaagttgtcaccaaagttgtaattaaatggatgtacaaatatcattg 5383939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 19920874 - 19920948
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||||| | ||||||  |||||||||||||||||||| |||||  |||||| ||||  ||||||||||| |||||    
T  19920874 accaataagaagagagaaaaacaaagttgtcaccaaagttgtccttaaatggatgtcaaaatatcattgctcttt 19920948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 10385526 - 10385599
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||||||| |||  ||| |||| ||||||||||| || ||| |||||| ||||| ||||||||||| ||||    
T  10385526 accaatcaaaaaagagaaaagcaaaattgtcaccaaagttatcattaaatggatgtacaaatatcattgctctt 10385599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 23044944 - 23044915
Alignment:
Q  3 aagagaaatgatatttgtacaactatttta 32  Q
    ||||||||||||||||||||||||||||||    
T  23044944 aagagaaatgatatttgtacaactatttta 23044915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 26585247 - 26585218
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  26585247 taagagaaatgatatttgtacaactatttt 26585218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 27895721 - 27895652
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||| | ||||||  |||||||||||||||| ||| |||||  |||||||||||  |||||||||||    
T  27895721 aaccaataagaagagagaaaaacaaagttgtcactaaagttgtccttaaatgaatgtcaaaatatcattg 27895652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 1689390 - 1689418
Alignment:
Q  4 agagaaatgatatttgtacaactatttta 32  Q
    |||||||||||||||||||||||||||||    
T  1689390 agagaaatgatatttgtacaactatttta 1689418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 2257653 - 2257617
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaa 153  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  2257653 accaatcaaaagagaggaaaacaaagttgtcatcaaa 2257617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 10385424 - 10385460
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  10385424 taagagaaatgatatttgtacaaccattttgctacaa 10385460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 18610771 - 18610799
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  18610771 aagagaaatgatatttgtacaactatttt 18610799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 27563617 - 27563657
Alignment:
Q  150 caaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||||||| |||||| ||||| ||||||||||||||||    
T  27563617 caaaattgtcattaaatggatgtacaaatatcattgttctt 27563657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 45042259 - 45042287
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  45042259 aagagaaatgatatttgtacaactatttt 45042287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 50777383 - 50777315
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||| | ||||||  ||||||| |||||||||||||||||||  || || ||||| ||||||||||    
T  50777383 aaccaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcatt 50777315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 9542 - 9610
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  9542 accaatcaaaagagaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 9610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 4550446 - 4550514
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  4550446 accaatcaaaagagaggaaaacaaaattgtcaccaaagttgtcattaaatggatgtataaatatcattg 4550514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 51224797 - 51224724
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||||| ||||||||||| ||||    
T  51224797 accaatcaaaagagaggaaaacaaaattgtcaccaaagttgtcattaaatggatgtacaaatatcattgctctt 51224724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 56025368 - 56025441
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    |||||||||||||||  ||| |||||||||||||||| |||||| |||||||||||| ||||||||||| ||||    
T  56025368 accaatcaaaagagagaaaatcaaagttgtcaccaaagttgtcattaaatgaatgtacaaatatcattgctctt 56025441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 24019930 - 24019862
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||   |||||| |||||||||||| |||||| |||||  ||||| |||||||||||    
T  24019930 accaatcaaaagagagagaaacaaggttgtcaccaaagttgtcattaaatagatgtacaaatatcattg 24019862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 54165234 - 54165199
Alignment:
Q  3 aagagaaatgatatttgtacaactattttactacaa 38  Q
    ||||||||||||||||||||||| ||||||||||||    
T  54165234 aagagaaatgatatttgtacaaccattttactacaa 54165199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 6290459 - 6290488
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  6290459 taagagaaatgatatttgtacaactatttt 6290488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 12241055 - 12241084
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  12241055 taagagaaatgatatttgtacaactatttt 12241084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 29577510 - 29577481
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  29577510 taagagaaatgatatttgtacaactatttt 29577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 33093178 - 33093149
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  33093178 taagagaaatgatatttgtacaactatttt 33093149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 42853936 - 42853965
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  42853936 taagagaaatgatatttgtacaactatttt 42853965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 50890147 - 50890118
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  50890147 taagagaaatgatatttgtacaactatttt 50890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 53662502 - 53662473
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  53662502 taagagaaatgatatttgtacaactatttt 53662473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 940332 - 940304
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  940332 aagagaaatgatatttgtacaactatttt 940304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 20632598 - 20632542
Alignment:
Q  126 aagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatca 182  Q
    ||||||| |||| ||||||||||||||||||||||  || || ||||| ||||||||    
T  20632598 aagagaaaaaaataaagttgtcaccaaaattgtcatcaattggatgtacaaatatca 20632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 31413848 - 31413820
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  31413848 aagagaaatgatatttgtacaactatttt 31413820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 33820409 - 33820381
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  33820409 aagagaaatgatatttgtacaactatttt 33820381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 42815402 - 42815430
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  42815402 aagagaaatgatatttgtacaactatttt 42815430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 44272883 - 44272855
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  44272883 aagagaaatgatatttgtacaactatttt 44272855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 46844201 - 46844133
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||| ||||||||  |||||||||||||||||||| |||||  |||||  ||||  ||||||||||    
T  46844201 aaccaataaaaagagagaaaaacaaagttgtcaccaaagttgtccttaaatagatgtcaaaatatcatt 46844133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 54803401 - 54803373
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  54803401 aagagaaatgatatttgtacaactatttt 54803373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 11089688 - 11089763
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||||||||||| |||  ||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||    
T  11089688 aaccaatcaaaaaagagaaaaacaaagttgtcaccaaaattgtcattaaatggatgtacaaatatcattgctcttt 11089763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 43587753 - 43587827
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||||||||||||||  |||||||||||||||||||| |||||| |||||| || || ||||||||||| |||||    
T  43587753 accaatcaaaagagagaaaaacaaagttgtcaccaaagttgtcattaaatggatatacaaatatcattgctcttt 43587827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 38504282 - 38504350
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||  |||||||| |||||||||||||||| | |||||| ||||| |||||||||||    
T  38504282 accaatcaaaagagagaaaaacaaaattgtcaccaaaattgtaattaaatggatgtacaaatatcattg 38504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 43602382 - 43602314
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||   ||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  43602382 accaatcaaaagagagagaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 43602314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 6105394 - 6105326
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||| ||||||||||| ||| |||||  |||||| ||||| || ||||||||    
T  6105394 accaatcaaaagagaggaaaataaagttgtcactaaagttgtctttaaatggatgtacaagtatcattg 6105326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 34972179 - 34972245
Alignment:
Q  119 caatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||| |||  |||||||| ||||||||||| |||||| |||||  ||||| |||||||||||    
T  34972179 caatcaaaaaagagaaaaacaaaattgtcaccaaagttgtcattaaatagatgtacaaatatcattg 34972245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 36497658 - 36497687
Alignment:
Q  2 taagagaaatgatatttgtacaactatttt 31  Q
    ||||||||||||||||||||||||||||||    
T  36497658 taagagaaatgatatttgtacaactatttt 36497687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 45529268 - 45529313
Alignment:
Q  139 aaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    |||||||| || ||||||||||||||||||||||  ||||||||||    
T  45529268 aaagttgttacaaaaattgtcactaaatgaatgttcaaatatcatt 45529313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 6440078 - 6440106
Alignment:
Q  2 taagagaaatgatatttgtacaactattt 30  Q
    |||||||||||||||||||||||||||||    
T  6440078 taagagaaatgatatttgtacaactattt 6440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 14233706 - 14233678
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  14233706 aagagaaatgatatttgtacaactatttt 14233678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 36637805 - 36637853
Alignment:
Q  142 gttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    |||||||| |||||| |||| |||||| |||| ||||||||||||||||    
T  36637805 gttgtcacaaaaattatcaccaaatgattgtacaaatatcattgttctt 36637853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 39884551 - 39884515
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  39884551 taagagaaatgatatttgtacaattattttattacaa 39884515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 7077298 - 7077230
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||  |||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  7077298 accaatcaaaagagagaaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 7077230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 26685807 - 26685906
Alignment:
Q  121 atcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctttcgctaaatattagaaagcgggtactccaa 220  Q
    ||||||||||| ||||||||| |||| |||||| || ||| |||||  ||||| ||||||||||| || ||| |||||||| |||||| |||||||||||    
T  26685807 atcaaaagagaggaaaacaaaattgtgaccaaagttatcattaaatagatgtacaaatatcattgctcattcactaaatatcagaaagtgggtactccaa 26685906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 26955538 - 26955637
Alignment:
Q  121 atcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctttcgctaaatattagaaagcgggtactccaa 220  Q
    ||||||||||| ||||||||| |||| |||||| || ||| |||||  ||||| ||||||||||| || ||| |||||||| |||||| |||||||||||    
T  26955538 atcaaaagagaggaaaacaaaattgtgaccaaagttatcattaaatagatgtacaaatatcattgctcattcactaaatatcagaaagtgggtactccaa 26955637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 10372229 - 10372182
Alignment:
Q  137 acaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    |||| |||||||||||| |||||| |||||||||||| ||||||||||    
T  10372229 acaatgttgtcaccaaagttgtcattaaatgaatgtacaaatatcatt 10372182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 4292912 - 4292962
Alignment:
Q  134 aaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||||||||||| |||||||||||  ||||||||||  ||||||||||    
T  4292912 aaaacaaagttgtcaacaaaattgtcatcaaatgaatgtccaaatatcatt 4292962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 30574336 - 30574262
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||||| | ||||||  |||||||||||||||| ||||||||||   |||| ||||| ||||||||||| |||||    
T  30574336 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattgctcttt 30574262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 41192586 - 41192620
Alignment:
Q  4 agagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||||||| ||||||    
T  41192586 agagaaatgatatttgtacaactattttgctacaa 41192620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 3154595 - 3154535
Alignment:
Q  124 aaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||||  |||| ||||||||||||||||||||||  || | |||||| ||||||||||    
T  3154595 aaaagagagaaaaataaagttgtcaccaaaattgtcatcaattaaatgtacaaatatcatt 3154535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 5996665 - 5996693
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  5996665 aagagaaatgatatttgtacaactatttt 5996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 19844382 - 19844354
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  19844382 aagagaaatgatatttgtacaactatttt 19844354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 26685688 - 26685724
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||| |||| |||||||    
T  26685688 taagagaaatgatatttgtacaaccatttgactacaa 26685724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 26955419 - 26955455
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||| |||| |||||||    
T  26955419 taagagaaatgatatttgtacaaccatttgactacaa 26955455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 29803223 - 29803251
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  29803223 aagagaaatgatatttgtacaactatttt 29803251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 34428158 - 34428186
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  34428158 aagagaaatgatatttgtacaactatttt 34428186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 35165677 - 35165705
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  35165677 aagagaaatgatatttgtacaactatttt 35165705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 38919861 - 38919889
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  38919861 aagagaaatgatatttgtacaactatttt 38919889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 12175287 - 12175219
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||||||||||||||| || ||| ||||| |||||| |||||||||||    
T  12175287 accaatcaaaagagaggaaaacaaagttgtcaccaaagttatcattaaataaatgtacaaatatcattg 12175219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 30413691 - 30413623
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||  ||| ||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  30413691 accaatcaaaagagagaaaagcaaagttgtcaccaaaattgtcattaaatggatgtacaaatatcattg 30413623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 6885039 - 6885095
Alignment:
Q  134 aaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    |||||||||||||||| ||| ||||||  ||||||||||| ||||||||||| ||||    
T  6885039 aaaacaaagttgtcactaaagttgtcatgaaatgaatgtacaaatatcattgctctt 6885095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 4319768 - 4319796
Alignment:
Q  4 agagaaatgatatttgtacaactatttta 32  Q
    |||||||||||||||||||||||||||||    
T  4319768 agagaaatgatatttgtacaactatttta 4319796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 8352833 - 8352861
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  8352833 aagagaaatgatatttgtacaactatttt 8352861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 18531599 - 18531627
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  18531599 aagagaaatgatatttgtacaactatttt 18531627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 30413800 - 30413764
Alignment:
Q  2 taagagaaatgatatttgtacaactattttactacaa 38  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  30413800 taagagaaatgatatttgtacaaccattttgctacaa 30413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 36582385 - 36582441
Alignment:
Q  134 aaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttctt 190  Q
    ||||||| |||||||||||| ||||||  ||||| ||||| ||||||||||| ||||    
T  36582385 aaaacaaggttgtcaccaaagttgtcatcaaatggatgtacaaatatcattgctctt 36582441  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 38021468 - 38021535
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||||||||||   ||||||| ||||||||||| || ||| |||||| ||||| |||||||||||    
T  38021468 accaatcaaaagagagagaaacaaaattgtcaccaaagttatcattaaatg-atgtacaaatatcattg 38021535  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 40115524 - 40115552
Alignment:
Q  3 aagagaaatgatatttgtacaactatttt 31  Q
    |||||||||||||||||||||||||||||    
T  40115524 aagagaaatgatatttgtacaactatttt 40115552  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 45372573 - 45372641
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||| |||||| |  |||||||  | ||||||||| |||||| |||||||||||| ||||||||||    
T  45372573 aaccaataaaaagatataaaaacaagatcgtcaccaaagttgtcattaaatgaatgtacaaatatcatt 45372641  T

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Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 17087 - 17155
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||||| ||||||   ||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  17087 accaatcagaagagagagaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatcattg 17155  T

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Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 16975 - 17008
Alignment:
Q  5 gagaaatgatatttgtacaactattttactacaa 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  16975 gagaaatgatatttgtacaaccattttactacaa 17008  T

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Target: scaffold0115 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 35452 - 35384
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    ||||||||||||||| ||||||||| || || |||||||||||| |||||  ||||| |||||||||||    
T  35452 accaatcaaaagagaggaaaacaaaattttctccaaaattgtcattaaatagatgtacaaatatcattg 35384  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 5190 - 5258
Alignment:
Q  116 aaccaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcatt 184  Q
    ||||||| ||||| ||| ||| |||||||||||||||||||||||||| ||  || || ||||||||||    
T  5190 aaccaataaaaagtgaaaaaatcaaagttgtcaccaaaattgtcactatatagatatacaaatatcatt 5258  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 1455 - 1387
Alignment:
Q  117 accaatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattg 185  Q
    |||||| | ||||||  |||||||||||||||| ||||||||||   |||| ||||| |||||||||||    
T  1455 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattg 1387  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 29897 - 29969
Alignment:
Q  119 caatcaaaagagaagaaaacaaagttgtcaccaaaattgtcactaaatgaatgtataaatatcattgttcttt 191  Q
    |||| ||||||||  ||||||| ||||| || ||| |||||| |||||| ||||| ||||||||||| |||||    
T  29897 caataaaaagagagaaaaacaaggttgtaactaaagttgtcattaaatggatgtacaaatatcattgatcttt 29969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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