View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_12 (Length: 787)
Name: NF0622_low_12
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 123 - 740
Target Start/End: Complemental strand, 46108510 - 46107907
Alignment:
| Q |
123 |
atagatttgatctatgtttattttaagactcaacgagattaatcgattttgattggtgtaataataatatgataattgtgcaacaaataaaagagtaggg |
222 |
Q |
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| T |
46108510 |
atagacttgatctatgtttattttaagactcaacgagattaatcgattttgattggtgtaataataatatgatatttgtgcaacaaataaaagagtaggg |
46108411 |
T |
|
| Q |
223 |
gtgtacgtggaaaatagtttaattaacattgaagtagggcaaatcttgcacaaaaacttttgtaccnnnnnnnnnnnnn-ccaggataacagactttaac |
321 |
Q |
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| T |
46108410 |
gcgtacgtggaaaatagtttaattaacattgaagtagggcaaatcttgcacaaaaacttttgtaccaaaaaaaataaaaaccaggataacagactttaac |
46108311 |
T |
|
| Q |
322 |
cttcacttcaccatatcaaataccaacaaccttttatcatttaagccctacttattgaactaattgcagttgacatgttacgtattgcttgctagttggt |
421 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46108310 |
cttcacttcatcatatcaaataccaataaccttttataatttaagccctacttattgaactaattgcagttgacatgttacgtattgcttgctagttggt |
46108211 |
T |
|
| Q |
422 |
tctcctgattttgatttccacaaatttatcatcctaaatttacttcaattattaaccagaaagcttggataaattatgtggtctagtttttaccaaaaat |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46108210 |
tctcctgattttgatttccacaaatttatcatcctaaatttgcttcaatcattaaccagaaagcttggataaattatgtggtctagtttttaccaaaaat |
46108111 |
T |
|
| Q |
522 |
aaataaaagttatgcttctaaacgataannnnnnnatacaaaaatttagatgagttgaatggcttaccaaaatcaggatagacctcgccnnnnnnntcat |
621 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||| |
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| T |
46108110 |
aaataaaagttgtgcttctaaacgataatttttttatacaaaaatttagatgagttgaatgacttaccaaagttaggatagacctcgccaaaaaagtcat |
46108011 |
T |
|
| Q |
622 |
cacacattagtgggaattgaactttgaccccttgaatttcctatcaactgagttgatttttattgatcttttaaacatgattggtgtgtcttctttaata |
721 |
Q |
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| T |
46108010 |
cacacattagtgggaattgaactttgaacccttgaatttcctatcaactgagt---------------ttttaaacatgattggtgtgtcttctttaata |
46107926 |
T |
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| Q |
722 |
tatttgttttcctatacac |
740 |
Q |
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| T |
46107925 |
tatttgttttcctatacac |
46107907 |
T |
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