View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_121 (Length: 255)
Name: NF0622_low_121
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_121 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 1915269 - 1915419
Alignment:
| Q |
15 |
atgaaggcgatatatgacacacacccaacaactaatgaataatgtataatatgataaatatatctataaaacacacttgacatgaacttcaagggttggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915269 |
atgaaggcgatatatgacacacacccaacaactaatgaacaatgtataatatgataaatatatctataaaacacacttgacatgaacttcaagggttggt |
1915368 |
T |
|
| Q |
115 |
ttttgaaggtggtggagaaaagaaagggaatattgttggcaaagtgattgg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
1915369 |
ttttgaaggtggtggagaaaagaaagggaatattgtcggcaaagtgtttgg |
1915419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 1915413 - 1915452
Alignment:
| Q |
180 |
tgtttggaagtggtggaagattgaactgtggaatagatgg |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1915413 |
tgtttggaagtggtggaagagtgaactggggaatagatgg |
1915452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2525 times since January 2019
Visitors: 3822