View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_124 (Length: 252)
Name: NF0622_low_124
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 13889634 - 13889417
Alignment:
| Q |
28 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
124 |
Q |
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| T |
13889634 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
13889535 |
T |
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| Q |
125 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
224 |
Q |
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| T |
13889534 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
13889435 |
T |
|
| Q |
225 |
aacatgtatccgtctgtg |
242 |
Q |
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|||||||||||||||||| |
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| T |
13889434 |
aacatgtatccgtctgtg |
13889417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 14029759 - 14029542
Alignment:
| Q |
28 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
124 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14029759 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
14029660 |
T |
|
| Q |
125 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029659 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
14029560 |
T |
|
| Q |
225 |
aacatgtatccgtctgtg |
242 |
Q |
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|||||||||||||||||| |
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| T |
14029559 |
aacatgtatccgtctgtg |
14029542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 7690677 - 7690487
Alignment:
| Q |
43 |
tgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgcttactaagttgaattggttagtgcatatcatga |
141 |
Q |
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|||| ||||| |||||||||| |||||||| |||||| |||||||||||| || |||||||||| | ||||||||||||| ||| || |||||||||| |
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| T |
7690677 |
tgcaatttctttagggtattttagttgctaatttggcgatttgagtaagatgtgtatgaatgaat--tcactaagttgaattagttggttcatatcatga |
7690580 |
T |
|
| Q |
142 |
tgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaagggaacatgtatcc |
235 |
Q |
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||| |||||||||||||| ||||||| |||| ||| ||| |||||||| || || ||||| |||| ||||| |||||||||||||||||| |
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| T |
7690579 |
tgt-tatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttttatgttaatattgtatgactgaagggaacatgtatcc |
7690487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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