View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_128 (Length: 251)

Name: NF0622_low_128
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_128
NF0622_low_128
[»] chr6 (11 HSPs)
chr6 (151-222)||(1500117-1500188)
chr6 (1-73)||(1499960-1500032)
chr6 (11-49)||(4910978-4911016)
chr6 (14-64)||(34620959-34621009)
chr6 (14-64)||(34748396-34748446)
chr6 (1-54)||(32888929-32888982)
chr6 (17-73)||(2493964-2494020)
chr6 (18-73)||(3525002-3525057)
chr6 (16-71)||(16122028-16122083)
chr6 (17-71)||(25208702-25208756)
chr6 (16-64)||(16442384-16442432)
[»] chr7 (6 HSPs)
chr7 (15-64)||(26975318-26975367)
chr7 (1-72)||(45557425-45557496)
chr7 (14-56)||(32295257-32295299)
chr7 (14-72)||(40491651-40491709)
chr7 (14-64)||(40561720-40561770)
chr7 (31-71)||(44967413-44967453)
[»] chr3 (4 HSPs)
chr3 (1-73)||(3776582-3776654)
chr3 (26-71)||(32932140-32932185)
chr3 (20-71)||(49526696-49526747)
chr3 (31-71)||(52931599-52931639)
[»] chr2 (5 HSPs)
chr2 (20-71)||(3853932-3853983)
chr2 (14-72)||(16518851-16518909)
chr2 (29-70)||(11240712-11240753)
chr2 (1-70)||(15220817-15220886)
chr2 (1-73)||(44439314-44439386)
[»] chr4 (7 HSPs)
chr4 (16-70)||(54487248-54487302)
chr4 (17-73)||(27096551-27096607)
chr4 (17-64)||(2171865-2171912)
chr4 (1-72)||(22250286-22250357)
chr4 (16-69)||(17898085-17898138)
chr4 (1-73)||(33843771-33843843)
chr4 (16-52)||(56241881-56241917)
[»] chr1 (9 HSPs)
chr1 (14-72)||(5268292-5268350)
chr1 (14-72)||(34915139-34915197)
chr1 (20-72)||(28464949-28465001)
chr1 (16-64)||(44786880-44786928)
chr1 (32-71)||(13056056-13056095)
chr1 (14-73)||(35961441-35961500)
chr1 (14-64)||(48548976-48549026)
chr1 (5-61)||(213246-213302)
chr1 (31-71)||(5410697-5410737)
[»] chr8 (6 HSPs)
chr8 (16-72)||(16972018-16972074)
chr8 (17-53)||(35035449-35035485)
chr8 (16-71)||(26490960-26491015)
chr8 (20-50)||(43210924-43210954)
chr8 (1-71)||(32767447-32767519)
chr8 (21-53)||(35025361-35025393)
[»] chr5 (7 HSPs)
chr5 (20-73)||(1105519-1105572)
chr5 (16-49)||(35957731-35957764)
chr5 (20-64)||(4306591-4306635)
chr5 (20-64)||(6095293-6095337)
chr5 (11-71)||(7926131-7926191)
chr5 (14-54)||(9184987-9185027)
chr5 (1-45)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 1500117 - 1500188
Alignment:
Q  151 aaaatgcaaaattaccttaataaaattagagtttaatggaggtgcaatcatggtgtaaaatagttttacacc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1500117 aaaatgcaaaattaccttaataaaattagagtttaatggaggtgcaatcatggtgtaaaatagttttacacc 1500188  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1499960 - 1500032
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1499960 aatttgttgctagactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 1500032  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4910978 - 4911016
Alignment:
Q  11 tcgactcacttttacataaatgtattcaaacataaatca 49  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  4910978 tcgactcacttttacataaatgtatccaaacataaatca 4911016  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 34620959 - 34621009
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||||||||||||| ||||||||||||| |||||  |||||||    
T  34620959 actcacttttacataaatgtatccaaacataaatcactttaccttcaactc 34621009  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 34748396 - 34748446
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||||||||||||| ||||||||||||| |||||  |||||||    
T  34748396 actcacttttacataaatgtatccaaacataaatcactttaccttcaactc 34748446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32888982 - 32888929
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaattta 54  Q
    ||||| ||| || |||||||||||||||||| ||||||||||||||||| ||||    
T  32888982 aatttattgttcaactcacttttacataaatatattcaaacataaatcatttta 32888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 2494020 - 2493964
Alignment:
Q  17 cacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||||| ||||| ||||    
T  2494020 cacttttacataaatatattcaaacataaatcaccttacattcaacgcgcttctagc 2493964  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3525002 - 3525057
Alignment:
Q  18 acttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||||||||||||||||||||| ||||| || ||| || ||||||| ||||||||    
T  3525002 acttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagc 3525057  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 16122083 - 16122028
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    |||||| |||||||| ||||||||||| ||||||| |||||||||| || ||||||    
T  16122083 tcacttatacataaaggtattcaaacacaaatcaacttacactcaaatcactttta 16122028  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 25208702 - 25208756
Alignment:
Q  17 cacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||||||||||||| |||  |||||||||||| |||||| ||||||| ||||||    
T  25208702 cacttttacataaatctatcgaaacataaatcattttacattcaactcactttta 25208756  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 16442432 - 16442384
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    ||||||||| |||| ||||| |||||||||||||||| ||| |||||||    
T  16442432 tcacttttaaataagtgtatccaaacataaatcaattcacattcaactc 16442384  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 26975367 - 26975318
Alignment:
Q  15 ctcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  26975367 ctcacttttacataaacgtattcaaacataaatcattttacattcaactc 26975318  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45557425 - 45557496
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    ||||||| |||| |||||||||||||| ||||||| |||||| |||||| |||||  ||||||| |||||||    
T  45557425 aatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttag 45557496  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 32295257 - 32295299
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttaca 56  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  32295257 actcacttttacataaatgtattaaaacacaaatcactttaca 32295299  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 40491651 - 40491709
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||||| ||||||| |||| |||||||| |||||  ||||||| |||||||    
T  40491651 actcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttag 40491709  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 40561770 - 40561720
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||||| ||||||| ||||||||||||| |||||  |||||||    
T  40561770 actcacttttacatgaatgtatccaaacataaatcactttactttcaactc 40561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 44967453 - 44967413
Alignment:
Q  31 tgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcactttta 44967413  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3776582 - 3776654
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    |||||||||||  |||||||||||||| ||||||| ||| ||||||||| |||||| |||||||  |||||||    
T  3776582 aatttgttgctgaactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagc 3776654  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 32932185 - 32932140
Alignment:
Q  26 ataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||    
T  32932185 ataaaggtattcaaacataaatcaatttacactgaacttgctttta 32932140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 49526747 - 49526696
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    |||||||| ||||||| |||||||||||||||||||| |||| || ||||||    
T  49526747 ttttacatgaatgtatccaaacataaatcaatttacaatcaattcactttta 49526696  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 52931639 - 52931599
Alignment:
Q  31 tgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||| |||||||||||||||||||||| ||||| ||||||    
T  52931639 tgtatccaaacataaatcaatttacactaaactcactttta 52931599  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 3853932 - 3853983
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  3853932 ttttacatgaatgtatccaaacataaatcaatttacattcaactcactttta 3853983  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 16518851 - 16518909
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||||| ||||||| |||||| |||||| ||||| |||||||| |||||||    
T  16518851 actcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 11240712 - 11240753
Alignment:
Q  29 aatgtattcaaacataaatcaatttacactcaactcgctttt 70  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  11240712 aatgtattcaaacataaatcaattcacattcaactcgctttt 11240753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15220886 - 15220817
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttt 70  Q
    ||||| ||| || ||||||||| |||| ||||||| ||||||||||||| |||||| ||||||| |||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44439314 - 44439386
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||| ||| || |||||||||||||||||  ||| ||||||||||||| |||||| | ||||| ||| ||||    
T  44439314 aatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatttaactcacttatagc 44439386  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 54487302 - 54487248
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttt 70  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  54487302 tcactttcacatcaatgtatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27096607 - 27096551
Alignment:
Q  17 cacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||||| ||||| ||||    
T  27096607 cacttttacataaatatattcaaacataaatcaccttacattcaacgcgcttctagc 27096551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2171865 - 2171912
Alignment:
Q  17 cacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    ||||||||||  ||||||| ||||||||||||||||||||||| ||||    
T  2171865 cacttttacagtaatgtatccaaacataaatcaatttacactcgactc 2171912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22250286 - 22250357
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    ||||| ||| |||| |||||||||||| ||||||| ||||  ||||||| || ||| |||||||||||||||    
T  22250286 aatttattgttcgattcacttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttag 22250357  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 17898138 - 17898085
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttt 69  Q
    |||||||||| ||||| ||| ||||||||||||| |||||| ||||||| ||||    
T  17898138 tcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33843771 - 33843843
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||| ||| || ||||||| |||||| ||| ||| ||||||||||||| ||||||  |||||| ||||||||    
T  33843771 aatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagc 33843843  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 56241917 - 56241881
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatt 52  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  56241917 tcacttttacattaatgtatccaaacataaatcaatt 56241881  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 5268292 - 5268350
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||||| ||| |||||||||| |||||| |||||| ||||||| |||||||    
T  5268292 actcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttag 5268350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 34915139 - 34915197
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||||| ||||||||||||||||||||| |||||   |||||| |||||||    
T  34915139 actcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttag 34915197  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 28465001 - 28464949
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||||||  |||||||||||||  ||||| |||||||||||||||    
T  28465001 ttttacataaatgtacacaaacataaatcatgttacattcaactcgcttttag 28464949  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44786928 - 44786880
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||| ||||||||| ||||||||||| |||||| |||||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactc 44786880  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 13056056 - 13056095
Alignment:
Q  32 gtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  13056056 gtattcaaacataaatcaattcacactcaactcactttta 13056095  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 35961441 - 35961500
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    |||||||||||||| |||||||  |||||||||||| |||||  ||||||| ||||||||    
T  35961441 actcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagc 35961500  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 48549026 - 48548976
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    ||||||||||||||||||||||  |||||||||||| |||||  |||||||    
T  48549026 actcacttttacataaatgtatcaaaacataaatcattttaccttcaactc 48548976  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 213302 - 213246
Alignment:
Q  5 tgttgctcgactcacttttacataaatgtattcaaacataaatcaatttacactcaa 61  Q
    ||||| || ||||||||||||||  |||||| ||||||||||||| |||||| ||||    
T  213302 tgttgttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaa 213246  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 5410697 - 5410737
Alignment:
Q  31 tgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||||||||||||||||||||||||  |||||| ||||||    
T  5410697 tgtattcaaacataaatcaatttacatccaactcactttta 5410737  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 16972074 - 16972018
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttag 72  Q
    |||||||||||| |||||||||||||| |||||| |||||  ||||||| |||||||    
T  16972074 tcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttag 16972018  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 35035485 - 35035449
Alignment:
Q  17 cacttttacataaatgtattcaaacataaatcaattt 53  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35035485 cacttttacatgaatgtattcaaacataaatcaattt 35035449  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26490960 - 26491015
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    |||||| || ||||| |||| |||||| ||||||||||||||||||||| ||||||    
T  26490960 tcacttctatataaaggtatccaaacacaaatcaatttacactcaactcactttta 26491015  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 43210924 - 43210954
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaa 50  Q
    |||||||||||||||||||||||||||||||    
T  43210924 ttttacataaatgtattcaaacataaatcaa 43210954  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32767447 - 32767519
Alignment:
Q  1 aatttgttgctcgactcacttttacata--aatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||| ||| || ||||||||||||| |  ||||||| ||||||||||||||||||||  |||||| ||||||    
T  32767447 aatttattgttcaactcacttttacacatgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 35025393 - 35025361
Alignment:
Q  21 tttacataaatgtattcaaacataaatcaattt 53  Q
    ||||||| |||||||||||||||||||||||||    
T  35025393 tttacattaatgtattcaaacataaatcaattt 35025361  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 1105519 - 1105572
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagc 73  Q
    ||||||| |||||||| |||| ||||||||||||||| |||||  |||||||||    
T  1105519 ttttacacaaatgtatccaaatataaatcaatttacattcaacctgcttttagc 1105572  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 35957764 - 35957731
Alignment:
Q  16 tcacttttacataaatgtattcaaacataaatca 49  Q
    |||||||||||||||| |||||||||||||||||    
T  35957764 tcacttttacataaatatattcaaacataaatca 35957731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4306591 - 4306635
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||| ||||||| ||||||||||||| |||||| |||||||    
T  4306591 ttttacatgaatgtatccaaacataaatcattttacattcaactc 4306635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 6095337 - 6095293
Alignment:
Q  20 ttttacataaatgtattcaaacataaatcaatttacactcaactc 64  Q
    |||||||||||| ||||||||||||||||| ||| || |||||||    
T  6095337 ttttacataaatatattcaaacataaatcatttttcaatcaactc 6095293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 7926131 - 7926191
Alignment:
Q  11 tcgactcacttttacataaatgtattcaaacataaatcaatttacactcaactcgctttta 71  Q
    ||||| ||||||||||||||| |||||||||||| |||| |  ||| ||||||| ||||||    
T  7926131 tcgacccacttttacataaatatattcaaacatagatcattcaacattcaactcactttta 7926191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 9185027 - 9184987
Alignment:
Q  14 actcacttttacataaatgtattcaaacataaatcaattta 54  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  9185027 actcacttctacataagtgtattcaaacataaatcatttta 9184987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37886063 - 37886019
Alignment:
Q  1 aatttgttgctcgactcacttttacataaatgtattcaaacataa 45  Q
    ||||| ||| || ||||||||||||| ||||||||||||||||||    
T  37886063 aatttattgttcaactcacttttacacaaatgtattcaaacataa 37886019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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