View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_135 (Length: 241)
Name: NF0622_low_135
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_135 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 26677114 - 26676892
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26677114 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
26677015 |
T |
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| Q |
119 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26677014 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatga |
26676915 |
T |
|
| Q |
219 |
aacttgtttcctcgaaaagtgac |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
26676914 |
aacttgtttcctcgaaaagtgac |
26676892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 26688976 - 26689198
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26688976 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatatgacataggaaacctt |
26689075 |
T |
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| Q |
119 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatga |
218 |
Q |
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| T |
26689076 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatga |
26689175 |
T |
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| Q |
219 |
aacttgtttcctcgaaaagtgac |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
26689176 |
aacttgtttcctcgaaaagtgac |
26689198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 26693160 - 26693348
Alignment:
| Q |
51 |
atgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaaccttgttctccgagaacgcaaaacaaatggtttcat |
150 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||| || || ||| |||| | ||| | || ||||||| | |
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| T |
26693160 |
atgtttggtccacaaacactaactcatccaaaccacttgagttgattttgtacgatacaggaaatctcgtcctcagagagcacaacaaaattggtttcgt |
26693259 |
T |
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| Q |
151 |
tttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatgaaacttgtttcctcgaaaagtg |
239 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
26693260 |
tttgtggcaaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggcacatgaaacttgtttcctccaaaagtg |
26693348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 26715460 - 26715242
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
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||||||| | |||||||| |||||||| | ||||| ||||||||||| || ||||| ||||| |||||||||| |||| ||||| | ||||| || |
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| T |
26715460 |
caacctcattttaaccgacgcaggacagtttaatgtttggtccacaaacacatactcactcaaacaacttgagttggttttgtacgatacgggaaatctc |
26715361 |
T |
|
| Q |
119 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatga |
218 |
Q |
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|| || |||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26715360 |
attttcagagaacataacaaaaatggtttcattttgtggcgaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatga |
26715261 |
T |
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| Q |
219 |
aacttgtttcctcgaaaag |
237 |
Q |
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| T |
26715260 |
accttgtttcgtccaaaag |
26715242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 26738699 - 26738481
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
| |
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||||||| | |||||||| |||||||| | ||||| ||||| ||||| || ||||| ||||| |||||||||| |||| ||||| | ||||| || |
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| T |
26738699 |
caacctcattttaaccgacgcaggacagtttaatgtttggtctacaaacacatactcactcaaacaacttgagttggttttgtacgatacgggaaatctc |
26738600 |
T |
|
| Q |
119 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatga |
218 |
Q |
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||||| |||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26738599 |
attctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatga |
26738500 |
T |
|
| Q |
219 |
aacttgtttcctcgaaaag |
237 |
Q |
| |
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| T |
26738499 |
accttgtttcgtccaaaag |
26738481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 26745734 - 26745513
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
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||||||| | |||||||| |||||||| | ||| || ||||||||||| ||||||||||||||| ||||||||||||||| | ||||| |||||| || |
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| T |
26745734 |
caacctcattttaaccgacgcaggacagttcaacgtttggtccacaaacactaactcatccaaaaaacttgagttgtttttgtgcgacacaggaaatctc |
26745635 |
T |
|
| Q |
119 |
gttctccgagaacgcaaaacaaatggtttca---ttttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtaca |
215 |
Q |
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|||| ||||||| ||| || | || || || | ||||||| || ||||||| ||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
26745634 |
attcttcgagaacacaacactattgtttccaatttcttgtggcagagttttgattccccaacagatactctccttcctgatcaaagtttcacaaggtaca |
26745535 |
T |
|
| Q |
216 |
tgaaacttgtttcctcgaaaag |
237 |
Q |
| |
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|| |||| ||||||| ||||| |
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| T |
26745534 |
tgcaactcatttcctcaaaaag |
26745513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 26700287 - 26700078
Alignment:
| Q |
19 |
caacctcgtcttaaccgatgcaggacattccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaacctt |
118 |
Q |
| |
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|||||| || |||||||||||||| |||||||| ||||| ||| | || |||||||||||| ||||| |||||||||| ||||| | ||||||||| |
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| T |
26700287 |
caaccttgtattaaccgatgcaggggtgtccaatgtttggtcaacagaaacaaactcatccaaatcacttcagttgtttttgtacgaaacaggaaacctc |
26700188 |
T |
|
| Q |
119 |
gttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaagtttcacaaggtacatga |
218 |
Q |
| |
|
||||| |||||| | | |||||||||| ||||||||| ||| |||||||| ||||||||||| |||||||||| |||| ||| || ||||||||| |
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| T |
26700187 |
gttctgagagaacaagacataaatggtttcgttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaagatttgactgggtacatga |
26700088 |
T |
|
| Q |
219 |
aacttgtttc |
228 |
Q |
| |
|
| |||||||| |
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| T |
26700087 |
accttgtttc |
26700078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 26735416 - 26735263
Alignment:
| Q |
47 |
tccaatgtatggtccacaaatactaactcatccaaaccacttgagttgtttttatacgacataggaaaccttgttctccgagaacgcaaaacaaatggtt |
146 |
Q |
| |
|
||||| || ||||| || || |||| |||||||||| ||||| |||||||||| ||||| | ||||||||| ||||| |||||| | | |||||||| |
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| T |
26735416 |
tccaacgtttggtcgactaaaactagctcatccaaagcacttcagttgtttttgtacgaaacaggaaacctcgttctgagagaacaagacataaatggtt |
26735317 |
T |
|
| Q |
147 |
tcattttgtggcgaagctttgattttccaacagataccctccttcctggtcaaa |
200 |
Q |
| |
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|| ||||||||| ||| |||||||| ||||||||||| |||||||||| ||||| |
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| T |
26735316 |
tcgttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaaa |
26735263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 47192134 - 47192174
Alignment:
| Q |
155 |
tggcgaagctttgattttccaacagataccctccttcctgg |
195 |
Q |
| |
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|||| |||||||||||||||||||||||| || |||||||| |
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| T |
47192134 |
tggcaaagctttgattttccaacagatactcttcttcctgg |
47192174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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