View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_137 (Length: 237)
Name: NF0622_low_137
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_137 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 26926890 - 26926768
Alignment:
| Q |
22 |
caataaatttttatttatctatttgtcatttgattcaaccatggttaaaccgattgaaccaagtgaaccaatgaccggtagtaatatcatcttcaggttt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
26926890 |
caataaatttttatttatctatttgtcatttgattcaaccatggttaaatcaattgaaccaagtgaaccaatgacctgtagtaat---atcttgaggttt |
26926794 |
T |
|
| Q |
122 |
atttcatgtatgtgcaatgtttgatg |
147 |
Q |
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| T |
26926793 |
atttcatgtatgtgcaatgtttgatg |
26926768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 26926187 - 26926221
Alignment:
| Q |
110 |
atcttcaggtttatttcatgtatgtgcaatgtttg |
144 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
26926187 |
atcttgaggtttatttcatgtatgtgcaatgtttg |
26926221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 27562779 - 27562728
Alignment:
| Q |
43 |
tttgtcatttgattcaaccatggttaaaccgattgaaccaagtgaaccaatg |
94 |
Q |
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| T |
27562779 |
tttgtcatgtgattcaaccatggttaaaccgattgaaccaagtgaaccaatg |
27562728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 36669837 - 36669776
Alignment:
| Q |
32 |
ttatttatctatttgtcatttgattcaaccatggttaaaccgattgaaccaagtgaaccaat |
93 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
36669837 |
ttatttatctatttgtcctttgattcaaccatgaataaactgattgaaccaagtgaaccaat |
36669776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 1057245 - 1057203
Alignment:
| Q |
41 |
tatttgtcatttgattcaaccatggttaaaccgattgaaccaa |
83 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
1057245 |
tatttgtcatctgattcaaccataattaaaccgattgaaccaa |
1057203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 5039360 - 5039307
Alignment:
| Q |
29 |
tttttatttatctatttgtcatttgattcaaccatggttaaaccgattgaacca |
82 |
Q |
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|||||||||| ||||||||||||| ||||||| || ||||||| ||||||||| |
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|
| T |
5039360 |
tttttatttacttatttgtcatttggttcaaccgtgattaaaccaattgaacca |
5039307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 48665625 - 48665674
Alignment:
| Q |
33 |
tatttatctatttgtcatttgattcaaccatggttaaaccgattgaacca |
82 |
Q |
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||||||| |||||||||| || ||||||||||||| ||||| |||||||| |
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|
| T |
48665625 |
tatttatttatttgtcatctggttcaaccatggttgaaccgcttgaacca |
48665674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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