View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_141 (Length: 218)
Name: NF0622_low_141
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_141 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10497640 - 10497768
Alignment:
| Q |
1 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10497640 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac |
10497739 |
T |
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| Q |
101 |
cgatttccacaatccctctctatgatgat |
129 |
Q |
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| T |
10497740 |
cggtttccacaatccccctctacgatgat |
10497768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10502669 - 10502797
Alignment:
| Q |
1 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10502669 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac |
10502768 |
T |
|
| Q |
101 |
cgatttccacaatccctctctatgatgat |
129 |
Q |
| |
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|| ||||||||||||| ||||| |||||| |
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|
| T |
10502769 |
cggtttccacaatccccctctacgatgat |
10502797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13335942 - 13336063
Alignment:
| Q |
1 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13335942 |
gtaaagcatacaaaacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac |
13336041 |
T |
|
| Q |
101 |
cgatttccacaatccctctcta |
122 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
13336042 |
cggtttccacaatccctctcta |
13336063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25508338 - 25508466
Alignment:
| Q |
1 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac |
100 |
Q |
| |
|
|||||| |||||||||| |||| | |||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||| ||||| |||| ||| | |
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| T |
25508338 |
gtaaaggatacaagacataatttaggaggacaattctaccaccaattaataagtgtctattattccatttagacaaccgattcatcactacatcgatagc |
25508437 |
T |
|
| Q |
101 |
cgatttccacaatccctctctatgatgat |
129 |
Q |
| |
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| ||||||||| || |||| | |||||| |
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|
| T |
25508438 |
tggtttccacaacccatctcaacgatgat |
25508466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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