View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_145 (Length: 211)
Name: NF0622_low_145
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_145 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 24492083 - 24491968
Alignment:
| Q |
95 |
acccagttcagagtaaaactcctacatctgggggacaggatccgacttgaatatcactatatgttaagagaaattacaaggatcatcccgtcaaagaata |
194 |
Q |
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| T |
24492083 |
acccagttcagagtaaaactcctacatctgggggacaggatccgacttgaatatcactatacgttaagagaaattacaaggatcat-ccgtcaaagaatc |
24491985 |
T |
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| Q |
195 |
tagcaatgccatctctc |
211 |
Q |
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||||||||||||||||| |
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| T |
24491984 |
tagcaatgccatctctc |
24491968 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 24495392 - 24495331
Alignment:
| Q |
95 |
acccagttcagagtaaaactcctacatctgggggacaggatccgacttgaatatcactatat |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||| |
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| T |
24495392 |
acccagttcagagtaaaactcctacatctgggggacagaatccgccttgaagattactatat |
24495331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 51187416 - 51187492
Alignment:
| Q |
106 |
agtaaaactcctacatctgggggacaggatccgacttgaatatcactatatgttaagagaaattacaaggatcatcc |
182 |
Q |
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|||| ||||||||||||| ||||||| |||| |||||||| |||||||||| | ||||||||||| |||||||| |
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| T |
51187416 |
agtagaactcctacatctaggggacaagatctgacttgaagctcactatatgattgaagaaattacaatgatcatcc |
51187492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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