View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_146 (Length: 203)
Name: NF0622_low_146
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_146 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 47380712 - 47380587
Alignment:
| Q |
1 |
actttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatctagggttataacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47380712 |
actttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacc |
47380613 |
T |
|
| Q |
101 |
taaatcatgcagaatgaggctttcat |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
47380612 |
taaatcatgcagaatgaggctttcat |
47380587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 47816183 - 47816051
Alignment:
| Q |
1 |
actttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatctagggttataacc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47816183 |
actttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacc |
47816084 |
T |
|
| Q |
101 |
taaatcatgcagaatgaggctttcatctcactc |
133 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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|
| T |
47816083 |
taaatcatgcagaatgaggctttcatgtcactc |
47816051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 45112804 - 45112703
Alignment:
| Q |
1 |
actttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatctagggttataacc |
100 |
Q |
| |
|
||||||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||| ||||| || ||||| | |||||| ||||||||||||||| |
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| T |
45112804 |
actttgtttgatttcttccatcagtttcttcaacctctcctcaaactcaccacggtatttggttccggctacaagcaaacccatgtctagggttataacc |
45112705 |
T |
|
| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
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|
| T |
45112704 |
ta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 17717923 - 17717791
Alignment:
| Q |
1 |
actttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatctagggttataacc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
17717923 |
actttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacc |
17717824 |
T |
|
| Q |
101 |
taaatcatgcagaatgaggctttcatctcactc |
133 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
17717823 |
taaatcatgcagaatgaggctttcatgtcactc |
17717791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 40243598 - 40243475
Alignment:
| Q |
2 |
ctttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatctagggttataacct |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40243598 |
ctttgtttgatttcctccattagttttttcaatctttcttcaaattctccacggtatttagttccagctacaagtagacccatatctagggttataacct |
40243499 |
T |
|
| Q |
102 |
aaatcatgcagaatgaggctttca |
125 |
Q |
| |
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||||||||||| ||||||||| |
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|
| T |
40243498 |
gcatcatgcagaacaaggctttca |
40243475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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