View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_17 (Length: 697)

Name: NF0622_low_17
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_17
NF0622_low_17
[»] scaffold0428 (6 HSPs)
scaffold0428 (29-686)||(11592-12250)
scaffold0428 (33-389)||(4070-4427)
scaffold0428 (551-686)||(5428-5564)
scaffold0428 (445-520)||(5615-5690)
scaffold0428 (236-282)||(12849-12895)
scaffold0428 (403-447)||(3750-3794)
[»] chr6 (27 HSPs)
chr6 (29-686)||(33282002-33282660)
chr6 (393-686)||(33397794-33398096)
chr6 (393-686)||(33408705-33409006)
chr6 (33-327)||(33260069-33260360)
chr6 (402-545)||(33283873-33284018)
chr6 (131-388)||(33385694-33385960)
chr6 (446-544)||(33387358-33387456)
chr6 (301-385)||(33259985-33260069)
chr6 (445-545)||(33261817-33261917)
chr6 (149-268)||(33416581-33416700)
chr6 (551-686)||(33283665-33283801)
chr6 (142-282)||(33397055-33397198)
chr6 (579-686)||(33387137-33387253)
chr6 (338-385)||(33355463-33355510)
chr6 (150-231)||(31564219-31564299)
chr6 (551-636)||(33261662-33261745)
chr6 (336-389)||(33416479-33416532)
chr6 (236-282)||(33281357-33281403)
chr6 (637-683)||(33405220-33405266)
chr6 (236-282)||(33408005-33408051)
chr6 (406-447)||(9165229-9165270)
chr6 (414-447)||(31564846-31564879)
chr6 (406-447)||(33385360-33385401)
chr6 (411-447)||(24632079-24632115)
chr6 (299-379)||(31564378-31564458)
chr6 (403-447)||(33259629-33259673)
chr6 (515-554)||(33358142-33358182)
[»] chr2 (3 HSPs)
chr2 (144-389)||(17443261-17443514)
chr2 (445-540)||(17441585-17441680)
chr2 (551-682)||(17441728-17441867)


Alignment Details
Target: scaffold0428 (Bit Score: 547; Significance: 0; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 29 - 686
Target Start/End: Original strand, 11592 - 12250
Alignment:
Q  29 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnn-cctatatggagatggaggannnnnnnnnn 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||              
T  11592 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggatttttttttttcctatatggagatggaggatttttttctt 11691  T
Q  128 nnngttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 227  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11692 tttgttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 11791  T
Q  228 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  11792 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcatt 11891  T
Q  328 acaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaaactaggagtttggacatatcgttgaattcttacataag 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892 acaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaaactaggagtttggacatatcgttgaattcttacataag 11991  T
Q  428 atttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11992 atttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaa 12091  T
Q  528 ttttgttaactttatattttaatttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccgg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  12092 ttttgttaactttatattttaatttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgcgtctgg 12191  T
Q  628 tgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcat 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12192 tgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcat 12250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 33 - 389
Target Start/End: Complemental strand, 4427 - 4070
Alignment:
Q  33 tgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnncctatatggagatggaggannnnnnnnnnnnn-g 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||              |    
T  4427 tgatattacacataatagctagcttatttagcttattacacataacggatagaggattttttttttcctatatggagatggaggattttttttctttttg 4328  T
Q  132 ttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaag 231  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  4327 ttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttcccactcctgaaagtcctgcacctgaagaag 4228  T
Q  232 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcattacaa 331  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  4227 tgccagaacaaacaccagtagcatcacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcattacaa 4128  T
Q  332 ctttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaa 389  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  4127 ctttagatgaaggcctgagcaaaggttacaatttcatcttattttcttcgtatttcaa 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 551 - 686
Target Start/End: Complemental strand, 5564 - 5428
Alignment:
Q  551 ttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccggtgtctgtgtttcatagacaaca- 649  Q
    |||||||||||||||||| |||||| | ||||| ||||||||| |||  ||||||||||||||  | | || |||||||||||||||||||||||||||     
T  5564 ttttagactgaattttataatttacggggtgggagttttaaatatgt--taggttgtaatttcttttccgtttccggtgtctgtgtttcatagacaacaa 5467  T
Q  650 --ttttaaggaacactttatcacggaaatctgcattcat 686  Q
      |||||||||||||| |||||| |||||||||||||||    
T  5466 cattttaaggaacactatatcactgaaatctgcattcat 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 5690 - 5615
Alignment:
Q  445 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattc 520  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5690 gtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattc 5615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 12849 - 12895
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  12849 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 3794 - 3750
Alignment:
Q  403 acatatcgttgaattcttacataagatttctaatttttaaatgtc 447  Q
    ||||||| ||||||||||||||||||||| || || |||||||||    
T  3794 acatatctttgaattcttacataagatttatagttgttaaatgtc 3750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 531; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 29 - 686
Target Start/End: Complemental strand, 33282660 - 33282002
Alignment:
Q  29 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnn-cctatatggagatggaggannnnnnnnnn 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||              
T  33282660 agaatgatattacacataatagctagcttatttagcttattacacataacggatagaggatttttttttttcctatatggagatggaggatttttttctt 33282561  T
Q  128 nnngttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 227  Q
       |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282560 tttgttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaa 33282461  T
Q  228 gaagtgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  33282460 gaagtgccagaacaaacaccagtagcaacacaagttgaagaagttgcaattgcattaaaaaaaaagaagtgtatctaactctaatagacaaactggcatt 33282361  T
Q  328 acaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaaactaggagtttggacatatcgttgaattcttacataag 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282360 acaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaaactaggagtttggacatatcgttgaattcttacataag 33282261  T
Q  428 atttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaa 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282260 atttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaa 33282161  T
Q  528 ttttgttaactttatattttaatttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccgg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  33282160 ttttgttaactttatattttaatttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgcgtctgg 33282061  T
Q  628 tgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcat 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282060 tgtctgtgtttcatagacaacattttaaggaacactttatcacggaaatctgcattcat 33282002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 393 - 686
Target Start/End: Complemental strand, 33398096 - 33397794
Alignment:
Q  393 aggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaa 492  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||||    
T  33398096 aggagtttggacatatcgttgaattcttacataagatttataatttttaaatgtcaacaagtgataacaagttgaccgcaaaaacaatctttgttgtcaa 33397997  T
Q  493 ctgcaagcagaggtactgaagataattcaaaagaattttgttaactttatatt-ttaatttttagactgaattttatgatttaccgagtgggggttttaa 591  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||    
T  33397996 ccgctagcagaggtactgaagataattcaaaagaattttgttaactttatattattattttttagactgaattttatgatttacggggtgggggttttaa 33397897  T
Q  592 atttgtgttaggttg-taatttccgtgctgtgtccggtgtctgtg-------tttcatagacaacattttaaggaacactttatcacggaaatctgcatt 683  Q
    ||||||||||| | | |  | ||||||| ||||||||||||||||        | |||||||||||||||||||||||||||||||| ||||||||||||    
T  33397896 atttgtgttagctaggttgtatccgtgccgtgtccggtgtctgtgactcatagtccatagacaacattttaaggaacactttatcactgaaatctgcatt 33397797  T
Q  684 cat 686  Q
    |||    
T  33397796 cat 33397794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 393 - 686
Target Start/End: Complemental strand, 33409006 - 33408705
Alignment:
Q  393 aggagtttggacatatcgttgaattcttacataagatttctaatttttaaatgtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaa 492  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||    
T  33409006 aggagtttggacatatcgttgaattcttacataagatttataatttttaaatgtcaacaagtgataacaagtcgaccggaaaaacaatctttgttgtcaa 33408907  T
Q  493 ctgcaagcagaggtactgaagataattcaaaagaattttgttaactttatatt-ttaatttttagactgaattttatgatttaccgagtgggggttttaa 591  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| | |||||||||||||    
T  33408906 ccgctagcagaggtactgaagataattcaaaagaattttgttaactttatattattattttttagactga-ttttatgatttacggggtgggggttttaa 33408808  T
Q  592 atttgtgttaggttg-taatttccgtgctgtgtccggtgtctgtg-------tttcatagacaacattttaaggaacactttatcacggaaatctgcatt 683  Q
    ||||||||||| | | |  | ||||||| ||||||||||||||||        | |||||||||||||||||||||||||||||||| ||||||||||||    
T  33408807 atttgtgttagctaggttgtatccgtgccgtgtccggtgtctgtgactcatagtccatagacaacattttaaggaacactttatcactgaaatctgcatt 33408708  T
Q  684 cat 686  Q
    |||    
T  33408707 cat 33408705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 33260360 - 33260069
Alignment:
Q  33 tgatattacacataatagctagcttatttagcttattacacataacggatagaggannnnnnnnnncctatatggagatggaggannnnnnnnnnnnn-g 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||              |    
T  33260360 tgatattacacataatagctagcttatttagcttattacacataacggatagaggattttttttt-cctatatggagatggaggattttttttctttttg 33260262  T
Q  132 ttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaag 231  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||| | |||||||    
T  33260261 ttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttccctctcctgaaagccctgcaaccgaagaag 33260162  T
Q  232 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattnnnnnnnnngaagtgtatctaactctaatagacaaactggcatt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||||||    
T  33260161 tgccagaacaaacaccagtagcagcacaagttgaagaagttgcaattgcattaaaaaaa---aagtgtatctaactctaacagacaaactggcatt 33260069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 402 - 545
Target Start/End: Complemental strand, 33284018 - 33283873
Alignment:
Q  402 gacatatcgttgaattcttacataagatttctaatttttaaat--gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaag 499  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33284018 gacatatcgttgaattcttacataaaatttctaatttttaaatatgtcaagaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaag 33283919  T
Q  500 cagaggtactgaagataattcaaaagaattttgttaactttatatt 545  Q
    ||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  33283918 cagcggtactgaagataattcaaaagaatcttgttaattttatatt 33283873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 131 - 388
Target Start/End: Complemental strand, 33385960 - 33385694
Alignment:
Q  131 gttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaa 230  Q
    |||||||||||||||||||||||||||||||| ||||| || | ||||||| ||||||||  || ||||||||||||||||||||||| || ||||||||    
T  33385960 gttatgaagggagttttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagttccctctcctgaaagtcctccaactgaagaa 33385861  T
Q  231 gtgccagaacaaacaccagtagcagcacaagtt------gaagaagttgcaattgcatt---nnnnnnnnngaagtgtatctaactctaatagacaaact 321  Q
    ||||||||||||||||||||||||| |||||||      ||||||||||||||||||||              || ||||||||||||||| |||||||     
T  33385860 gtgccagaacaaacaccagtagcagtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaacc 33385761  T
Q  322 ggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttca 388  Q
    || |||||| | | |||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  33385760 ggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca 33385694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 446 - 544
Target Start/End: Complemental strand, 33387456 - 33387358
Alignment:
Q  446 tcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat 544  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  33387456 tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat 33387358  T

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Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 33260069 - 33259985
Alignment:
Q  301 tctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatt 385  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33260069 tctaactctaacagacaaactggcattacaactttagatgaagtcctgagcaaaggttgcaatttcatcttatttgcttcatatt 33259985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 445 - 545
Target Start/End: Complemental strand, 33261917 - 33261817
Alignment:
Q  445 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat 544  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  33261917 gtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattcaaaagaatcttgttaattttatat 33261818  T
Q  545 t 545  Q
    |    
T  33261817 t 33261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 33416700 - 33416581
Alignment:
Q  149 tttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaacacca 248  Q
    |||||||| ||||||||||||  ||||| |||| ||||||||  ||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||     
T  33416700 tttaacttcgaatcctctatccgcagatttaactgaagaaaacaatcaagttccctctcctgaaagtcctgccactgaagaggtgcaagaacaaacacct 33416601  T
Q  249 gtagcagcacaagttgaaga 268  Q
    ||| ||||||||||||||||    
T  33416600 gtatcagcacaagttgaaga 33416581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 551 - 686
Target Start/End: Complemental strand, 33283801 - 33283665
Alignment:
Q  551 ttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccggtgtctgtgtttcatagacaaca- 649  Q
    |||||||||||||||||| |||||| | ||||| ||||||||| |||  ||||||||||||||  | | || |||||||||||||||||||||||||||     
T  33283801 ttttagactgaattttataatttacggggtgggagttttaaatatgt--taggttgtaatttcatttccgtttccggtgtctgtgtttcatagacaacaa 33283704  T
Q  650 --ttttaaggaacactttatcacggaaatctgcattcat 686  Q
      |||||||||||||| |||||| |||||||||||||||    
T  33283703 cattttaaggaacactatatcactgaaatctgcattcat 33283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 33397198 - 33397055
Alignment:
Q  142 agttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaagtgc---caga 238  Q
    |||||| |||||||||| ||||| |||  ||||||||||||||||||| | | ||||||||||||||||||||||||||  ||||||||||||    |||    
T  33397198 agttttctttaactttggatcctttattaacagatgtaacagaagaaactgaacaagttccctctcctgaaagtcctgccactgaagaagtgcaagaaga 33397099  T
Q  239 acaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    ||||| ||| ||  | | |||||||||||| |||||||||||||    
T  33397098 acaaatacctgtcaccgtacaagttgaagaggttgcaattgcat 33397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 686
Target Start/End: Complemental strand, 33387253 - 33387137
Alignment:
Q  579 gtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccg------gtgtctgtgtttcatag---acaacattttaaggaacactttatca 669  Q
    |||||||||||||||||||||||||||||||| ||||||  || | ||      |||||||||||||||||   |||||| ||| |||||||||||||||    
T  33387253 gtgggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatca 33387154  T
Q  670 cggaaatctgcattcat 686  Q
    | || ||||||||||||    
T  33387153 ctgagatctgcattcat 33387137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 33355510 - 33355463
Alignment:
Q  338 atgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatt 385  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  33355510 atgaaagccggagcaaaggttgcaatttcatcttatttgcttcatatt 33355463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 31564219 - 31564299
Alignment:
Q  150 ttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaag 231  Q
    ||||||||||||| | ||| |||||||||||||||||||||  || ||| |||||||||||| ||||||||  |||||||||    
T  31564219 ttaactttgaatcatgtat-gacagatgtaacagaagaaaacgattaaggtccctctcctgagagtcctgccactgaagaag 31564299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 33261745 - 33261662
Alignment:
Q  551 ttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaatttccgtgctgtgtccggtgtctgtgt 636  Q
    |||||||||||||||||| |||||| | ||||| ||||||||  | |||||||||||||||||  ||| || | ||||||||||||    
T  33261745 ttttagactgaattttataatttacggggtgggagttttaaa--tatgttaggttgtaatttctttgccgttttcggtgtctgtgt 33261662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 33416532 - 33416479
Alignment:
Q  336 agatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaa 389  Q
    ||||||||||  ||| ||||||| | ||||||||||||||||||||||||||||    
T  33416532 agatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaa 33416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 33281403 - 33281357
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33281403 agaacaaacacctgtcgcagcacaggttgaagaggttgcaattgcat 33281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 683
Target Start/End: Complemental strand, 33405266 - 33405220
Alignment:
Q  637 ttcatagacaacattttaaggaacactttatcacggaaatctgcatt 683  Q
    |||||||| ||||||||||||||||||||||||  |||||| |||||    
T  33405266 ttcatagataacattttaaggaacactttatcattgaaatcagcatt 33405220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 33408051 - 33408005
Alignment:
Q  236 agaacaaacaccagtagcagcacaagttgaagaagttgcaattgcat 282  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  33408051 agaacaaacacctgtcgcagcacatgttgaagaggttgcaattgcat 33408005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 9165270 - 9165229
Alignment:
Q  406 tatcgttgaattcttacataagatttctaatttttaaatgtc 447  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  9165270 tatctttgaatttttacataagatttctaattgttaaatgtc 9165229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 31564846 - 31564879
Alignment:
Q  414 aattcttacataagatttctaatttttaaatgtc 447  Q
    ||||||||||||||||||||| ||||||||||||    
T  31564846 aattcttacataagatttctattttttaaatgtc 31564879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 33385401 - 33385360
Alignment:
Q  406 tatcgttgaattcttacataagatttctaatttttaaatgtc 447  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  33385401 tatctttgaattcttacataagatttctaatcgttaaatgtc 33385360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 24632079 - 24632115
Alignment:
Q  411 ttgaattcttacataagatttctaatttttaaatgtc 447  Q
    |||||||| |||||||||||||||||| |||||||||    
T  24632079 ttgaattcctacataagatttctaattgttaaatgtc 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 31564378 - 31564458
Alignment:
Q  299 tatctaactctaatagacaaactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgctt 379  Q
    ||||||| |||||| ||||||| ||||||||  ||| |||  |||||  ||| || |||| ||||||||||||||||||||    
T  31564378 tatctaattctaatggacaaaccggcattacttcttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctt 31564458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 33259673 - 33259629
Alignment:
Q  403 acatatcgttgaattcttacataagatttctaatttttaaatgtc 447  Q
    ||||||| ||||||||||||||||||||| || || |||||||||    
T  33259673 acatatctttgaattcttacataagatttatagttgttaaatgtc 33259629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 33358182 - 33358142
Alignment:
Q  515 taattcaaaagaattttgttaactttatatt-ttaattttt 554  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  33358182 taattcaaaagaatcttgttaactttatattattaattttt 33358142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 144 - 389
Target Start/End: Original strand, 17443261 - 17443514
Alignment:
Q  144 ttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctgaagaagtgccagaacaaa 243  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||  || |||||| ||||||||||||||||||| |  ||||||||||||||||||    
T  17443261 ttttatttaactttgaatcctctatgaacagatgtaacagaagaaaacaatgaagttctctctcctgaaagtcctgcaaccaaagaagtgccagaacaaa 17443360  T
Q  244 caccagtagcagcacaagt------tgaagaagttgcaattgcattnnnnnnnnngaa--gtgtatctaactctaatagacaaactggcattacaacttt 335  Q
    |||||| ||| ||||||||      |||||||||||||||||||||          ||  | ||||||||||||||| |||||||  |||||||| |||     
T  17443361 caccagcagcggcacaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttc 17443460  T
Q  336 agatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttcaa 389  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  17443461 agatgaaggcttgaccaaaggttgcaatttcatcttatttgcttcaaatttcaa 17443514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 445 - 540
Target Start/End: Original strand, 17441585 - 17441680
Alignment:
Q  445 gtcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaacttt 540  Q
    ||||||||||| |||||| ||||| |||| |||||||||||||||||||  |||||| |||||| ||||||||||||||| ||| |||||||||||    
T  17441585 gtcaacaagtgataacaaatcaactgcaacaacaatctctgttgtcaacaacaagcaaaggtacggaagataattcaaaaaaatcttgttaacttt 17441680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 682
Target Start/End: Original strand, 17441728 - 17441867
Alignment:
Q  551 ttttagactgaattttatgatttaccgagtgggggttttaaatttgtgttaggttgtaa-tttccgtgctgtgtccggtgtctg----tgtttcatagac 645  Q
    |||||||||||||||||| |||| | | |||||||||||||||||||||| |||||||| ||| | | | || |||||||||||    ||||||||||||    
T  17441728 ttttagactgaattttataatttgcggggtgggggttttaaatttgtgtttggttgtaattttgcatcccgtttccggtgtctgtttatgtttcatagac 17441827  T
Q  646 aac---attttaaggaacactttatcacggaaatctgcat 682  Q
    |||   |||||||||||||||||||||| ||||| |||||    
T  17441828 aacaatattttaaggaacactttatcactgaaatttgcat 17441867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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