View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_19 (Length: 692)

Name: NF0622_low_19
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_19
NF0622_low_19
[»] chr6 (2 HSPs)
chr6 (118-313)||(4277178-4277373)
chr6 (392-449)||(4276406-4276462)
[»] chr5 (4 HSPs)
chr5 (264-361)||(24091211-24091311)
chr5 (187-262)||(24090931-24091006)
chr5 (499-618)||(25682010-25682128)
chr5 (392-460)||(27202033-27202100)
[»] chr7 (4 HSPs)
chr7 (499-617)||(14074348-14074465)
chr7 (499-617)||(14384376-14384493)
chr7 (499-623)||(18497059-18497182)
chr7 (499-543)||(22334231-22334275)
[»] chr4 (1 HSPs)
chr4 (392-461)||(37578740-37578808)
[»] chr2 (1 HSPs)
chr2 (635-673)||(21503609-21503647)
[»] chr1 (2 HSPs)
chr1 (499-541)||(23506753-23506795)
chr1 (565-623)||(33175629-33175687)
[»] chr8 (1 HSPs)
chr8 (565-617)||(24926796-24926848)
[»] chr3 (1 HSPs)
chr3 (499-543)||(28730553-28730597)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 118 - 313
Target Start/End: Complemental strand, 4277373 - 4277178
Alignment:
Q  118 attctcatagctacacaaaagtataaactttcttatgttaattgtnnnnnnnttaatttgaaggactaagttgtaagttaagtatcataagctaatatga 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4277373 attctcatagctacacaaaagtataaactttcttatcttaattgtaaaaaaattaatttgaaggactaatttgtaagttaagtatcataagctaatatga 4277274  T
Q  218 ttgaaaagctctcataagataaatgctaatccatattaacccaaatgttggacttttccctactttattacaaatcagtattctaactaggcacaa 313  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  4277273 ttgaaaagctctcataagataaaagctaatccatattaacccaaatgttggacttttccctacttgattacaaatcagtattctaacaaggcacaa 4277178  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 4276462 - 4276406
Alignment:
Q  392 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatac 449  Q
    ||||||||| || ||||||||||||| ||||| |||| |||||||| |||||||||||    
T  4276462 atcaaaagatatgccattttgttgaagtcttt-cttgaagatcagtcggaccaaatac 4276406  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 24091211 - 24091311
Alignment:
Q  264 gttggacttttccctactttattacaaatcagtattctaactaggcacaaactagtttttattaac---ttccaaccaaataatgagctgcaacactcaa 360  Q
    ||||||||||||| ||||| || |||||||||||||||||| |||||||| || ||||||||||||   |||||||||||||| ||||||||||||||||    
T  24091211 gttggacttttccttacttgatcacaaatcagtattctaacaaggcacaagctcgtttttattaacttattccaaccaaataaggagctgcaacactcaa 24091310  T
Q  361 g 361  Q
    |    
T  24091311 g 24091311  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 24090931 - 24091006
Alignment:
Q  187 gttgtaagttaagtatcataagctaatatgattgaaaagctctcataagataaatgctaatccatattaacccaaa 262  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| | ||||||||||  |||||||||    
T  24090931 gttgtaagttaagtaacataagctaatttgattgaaaagctctcatcagatataggctaatccatgataacccaaa 24091006  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 618
Target Start/End: Complemental strand, 25682128 - 25682010
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 598  Q
    |||||||||||||| | ||||||||||||| | ||||| || ||| ||  ||||| ||||||||   ||||| || | | |||||||||||||||  |||    
T  25682128 aactcggtaattagaaaaacttattagaaa-gaaaatagaaaagagatgcaaaagaggtttgcagggtttaattgccttacccaatacgagattagattt 25682030  T
Q  599 gtgtgattcaaatgcgtaac 618  Q
    |||||||||||||| |||||    
T  25682029 gtgtgattcaaatgtgtaac 25682010  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 460
Target Start/End: Original strand, 27202033 - 27202100
Alignment:
Q  392 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatacgatgcctggag 460  Q
    ||||||||| |||| || |||||||| |||||  |||||||| ||||||||||||||| || |||||||    
T  27202033 atcaaaagatattctatattgttgaagtcttta-ttgcagattagttggaccaaatacaatacctggag 27202100  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 499 - 617
Target Start/End: Complemental strand, 14074465 - 14074348
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 598  Q
    |||||||||||||||| ||||| ||||||| | || || || ||| || ||||||  ||||||||  ||||| || |||||||||| |||||||| ||||    
T  14074465 aactcggtaattagcaaaactttttagaaa-gaaagtagaaaagagatgtaaaagatgtttgcaaggtttaattgccctgcccaatgcgagattaggttt 14074367  T
Q  599 gtgtgattcaaatgcgtaa 617  Q
    |||||||||||||| ||||    
T  14074366 gtgtgattcaaatgtgtaa 14074348  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 499 - 617
Target Start/End: Complemental strand, 14384493 - 14384376
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaagagatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgttt 598  Q
    |||||||||||||||| ||||| ||||||| | || || || ||| || ||||||  ||||||||  ||||| || |||||||||| |||||||| ||||    
T  14384493 aactcggtaattagcaaaactttttagaaa-gaaagtagaaaagagatgtaaaagatgtttgcaaggtttaattgccctgcccaatgcgagattaggttt 14384395  T
Q  599 gtgtgattcaaatgcgtaa 617  Q
    |||||||||||||| ||||    
T  14384394 gtgtgattcaaatgtgtaa 14384376  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 623
Target Start/End: Complemental strand, 18497182 - 18497059
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaaga-gatatttaaaaggggtttgcaaattttaactgtcctgcccaatacgagattatgtt 597  Q
    ||||| ||||||||  |||||||||   ||||||||||||||| || ||||||||| |||||| |   ||||| || | |||| ||| |||||||| |||    
T  18497182 aactcagtaattagtggaacttattg--aaagtaaataaaagaagagatttaaaagaggtttgtagggtttaattgccttgcctaatgcgagattaggtt 18497085  T
Q  598 tgtgtgattcaaatgcgtaacgacga 623  Q
     || ||||||| ||||||||||||||    
T  18497084 ggtttgattcatatgcgtaacgacga 18497059  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 22334231 - 22334275
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaagaga 543  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||    
T  22334231 aacttggtaattagctgaatttattagaaaagcaaataaaagaga 22334275  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 37578740 - 37578808
Alignment:
Q  392 atcaaaagacattccattttgttgaactcttttcttgcagatcagttggaccaaatacgatgcctggagt 461  Q
    ||||||||| |||||||||||||||| || ||||||| ||||| |||| ||||||||| |||||||||||    
T  37578740 atcaaaagatattccattttgttgaagtc-tttcttgaagatcggttgaaccaaatacaatgcctggagt 37578808  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 673
Target Start/End: Original strand, 21503609 - 21503647
Alignment:
Q  635 ccccttccgtctttgttggaattaacttggtaaaacaat 673  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  21503609 ccccttccgtctttgttgaaattaacttagtaaaacaat 21503647  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 23506795 - 23506753
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaaga 541  Q
    |||| |||||||||||||| |||||||||||| ||||||||||    
T  23506795 aacttggtaattagcagaatttattagaaaagcaaataaaaga 23506753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 623
Target Start/End: Original strand, 33175629 - 33175687
Alignment:
Q  565 ttttaactgtcctgcccaatacgagattatgtttgtgtgattcaaatgcgtaacgacga 623  Q
    |||||| ||||| || ||||||||||||||||| || ||| ||| ||||||||||||||    
T  33175629 ttttaattgtcccgctcaatacgagattatgttggtttgactcagatgcgtaacgacga 33175687  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 617
Target Start/End: Original strand, 24926796 - 24926848
Alignment:
Q  565 ttttaactgtcctgcccaatacgagattatgtttgtgtgattcaaatgcgtaa 617  Q
    |||||| ||||||||||||||| |||||| ||| |||||||||| ||| ||||    
T  24926796 ttttaattgtcctgcccaatacaagattaggttggtgtgattcagatgtgtaa 24926848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 28730553 - 28730597
Alignment:
Q  499 aactcggtaattagcagaacttattagaaaagtaaataaaagaga 543  Q
    |||||||||||||||| || |||||||||||  ||||||||||||    
T  28730553 aactcggtaattagcataatttattagaaaaagaaataaaagaga 28730597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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