View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_21 (Length: 649)

Name: NF0622_low_21
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_21
NF0622_low_21
[»] chr3 (9 HSPs)
chr3 (425-588)||(21788927-21789090)
chr3 (425-583)||(39463934-39464092)
chr3 (425-588)||(15462840-15463004)
chr3 (425-588)||(37152130-37152293)
chr3 (347-424)||(21788822-21788899)
chr3 (71-147)||(21788578-21788654)
chr3 (361-424)||(39463843-39463906)
chr3 (278-348)||(21788767-21788839)
chr3 (361-424)||(15463032-15463095)
[»] chr6 (2 HSPs)
chr6 (425-588)||(2960924-2961087)
chr6 (361-424)||(2960539-2960602)
[»] chr2 (2 HSPs)
chr2 (449-590)||(42401444-42401585)
chr2 (432-590)||(16324167-16324325)
[»] chr5 (3 HSPs)
chr5 (449-590)||(18092480-18092621)
chr5 (432-588)||(31468517-31468673)
chr5 (297-349)||(19534619-19534671)
[»] chr8 (1 HSPs)
chr8 (289-349)||(39605824-39605884)
[»] chr1 (1 HSPs)
chr1 (443-513)||(6842849-6842919)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 4e-80; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 425 - 588
Target Start/End: Original strand, 21788927 - 21789090
Alignment:
Q  425 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21788927 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaatccgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 21789026  T
Q  525 acctctctggcttctctagcttcattccggaatcgacagacattctgttagctgaactctctgc 588  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21789027 acctctctggcttctctggcttcattccggaatcgacagacattctgttagctgaactcactgc 21789090  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 425 - 583
Target Start/End: Original strand, 39463934 - 39464092
Alignment:
Q  425 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  39463934 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaacaccaatccgtgctgggttcggaggtatcatttgaaacaatgttggtgcct 39464033  T
Q  525 acctctctggcttctctagcttcattccggaatcgacagacattctgttagctgaactc 583  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39464034 acctctctggcttctctggcttcattccggaatcgacagacattctgttagctgaactc 39464092  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 425 - 588
Target Start/End: Complemental strand, 15463004 - 15462840
Alignment:
Q  425 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 524  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15463004 aataaccatcaatgtcacatccttaatgtggacgagagttgtctcggaactccaatccgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 15462905  T
Q  525 acctctctggcttctctagcttca-ttccggaatcgacagacattctgttagctgaactctctgc 588  Q
    |||||||| | |||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||    
T  15462904 acctctcttgtttctctggcttcatttccagaatcgacagacattcagttagctgaactcactgc 15462840  T

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Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 425 - 588
Target Start/End: Original strand, 37152130 - 37152293
Alignment:
Q  425 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 524  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  37152130 aataacaatatttgtaacattcttaatgtggacgggagttgtctcggaacaccaatccgtgcggggttcggaggtatcattcgaaacaatgttggagcct 37152229  T
Q  525 acctctctggcttctctagcttcattccggaatcgacagacattctgttagctgaactctctgc 588  Q
    | ||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||| ||||    
T  37152230 aactcgctggcttctctggcttcattccggattcgacagacatcctgctagctgaactcactgc 37152293  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 21788822 - 21788899
Alignment:
Q  347 acatcaaattaccactaccgtatcaacgattttgtcaacgtcatcgagtcaagtttcatgaggagcaatgtcatccct 424  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21788822 acatcaaattaccactaccgtatcaacgattctgtcaacgtcatcgagtcaagtttcatgaggagcaatgtcatccct 21788899  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 21788578 - 21788654
Alignment:
Q  71 gatggaatatctcaaagtttgttataggcataaaaagtgtatatttgttatagattactagcgaaaagacgggcatg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21788578 gatggaatatctcaaagtttgttataggcataaaaagtgtatatttgttatagattattagcgaaaagacgggcatg 21788654  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 39463843 - 39463906
Alignment:
Q  361 ctaccgtatcaacgattttgtcaacgtcatcgagtcaagtttcatgaggagcaatgtcatccct 424  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  39463843 ctaccgtatcaacgattctgtcaacgtcatcgagtcaagtttcaagaggagcaatgtcatccct 39463906  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 21788767 - 21788839
Alignment:
Q  278 ctaacaatgactatcaaataaa--gtgttgaattcatgacctttaacattatgcaacatcaaattaccactac 348  Q
    |||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21788767 ctaacaatgattatcaaataaaaagtgttgaactcatgacctttaacattatgcaacatcaaattaccactac 21788839  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 15463095 - 15463032
Alignment:
Q  361 ctaccgtatcaacgattttgtcaacgtcatcgagtcaagtttcatgaggagcaatgtcatccct 424  Q
    ||||||||| || |||| ||||||||||| ||||| ||||||||||  ||| ||||||||||||    
T  15463095 ctaccgtattaatgattctgtcaacgtcaccgagtaaagtttcatgcagagtaatgtcatccct 15463032  T

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Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 425 - 588
Target Start/End: Original strand, 2960924 - 2961087
Alignment:
Q  425 aataacaatcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 524  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2960924 aataaccatcattgtcacatccttaatgtggacgggagttgtctcggaactccaatatgtgctgggttcggaggtatcattcgaaacaatgttggtgcct 2961023  T
Q  525 acctctctggcttctctagcttcattccggaatcgacagacattctgttagctgaactctctgc 588  Q
    |||||||| | |||||| | |||||||  ||||||||||||||||||| |||||||||| ||||    
T  2961024 acctctctaggttctctggtttcattctagaatcgacagacattctgtgagctgaactcactgc 2961087  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 2960539 - 2960602
Alignment:
Q  361 ctaccgtatcaacgattttgtcaacgtcatcgagtcaagtttcatgaggagcaatgtcatccct 424  Q
    ||||||||| || |||| |||||| ||||| |||||||||||||||| ||| ||||||||||||    
T  2960539 ctaccgtattaatgattatgtcaatgtcattgagtcaagtttcatgaagagtaatgtcatccct 2960602  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 449 - 590
Target Start/End: Complemental strand, 42401585 - 42401444
Alignment:
Q  449 aatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcctacctctctggcttctctagcttca 548  Q
    ||||||||||| || || |||||||| ||||| | ||| ||||||||||||||| |||||||||||| ||| ||||||||| |||| |||||| ||||||    
T  42401585 aatgtggacggaagctgcctcggaacaccaatccatgcggggttcggaggtatctttcgaaacaatggtggagcctacctcgctggtttctctggcttca 42401486  T
Q  549 ttccggaatcgacagacattctgttagctgaactctctgctc 590  Q
    ||||||| ||||||||||| ||| ||||||||||| ||||||    
T  42401485 ttccggattcgacagacatcctgctagctgaactcactgctc 42401444  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 432 - 590
Target Start/End: Original strand, 16324167 - 16324325
Alignment:
Q  432 atcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcctacctctc 531  Q
    |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||  |||||||||| |||||||  ||||| ||    
T  16324167 atcaatgtcacattctcaatgtagacggcagttgtctcggaactccaattcgagctggattcggaggtatttttcgaaacaacgttggtggttacctatc 16324266  T
Q  532 tggcttctctagcttcattccggaatcgacagacattctgttagctgaactctctgctc 590  Q
    ||| | |||  | || ||  |||||||||||||||| ||||||||||||||| ||||||    
T  16324267 tggttactccggttttatctcggaatcgacagacatcctgttagctgaactcactgctc 16324325  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 449 - 590
Target Start/End: Original strand, 18092480 - 18092621
Alignment:
Q  449 aatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcctacctctctggcttctctagcttca 548  Q
    ||||||||||| || || |||||||| ||||| ||||| ||||||||| ||||| ||| |||||||| ||| ||||||||| |||| |||||| ||||||    
T  18092480 aatgtggacggaagctgcctcggaacaccaatccgtgcggggttcggatgtatctttccaaacaatggtggagcctacctcgctggtttctctggcttca 18092579  T
Q  549 ttccggaatcgacagacattctgttagctgaactctctgctc 590  Q
    ||||||| ||||||||||| ||| ||||||||||| ||||||    
T  18092580 ttccggattcgacagacatcctgctagctgaactcactgctc 18092621  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 432 - 588
Target Start/End: Original strand, 31468517 - 31468673
Alignment:
Q  432 atcattgtcacatccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaatgttggtgcctacctctc 531  Q
    |||| |||| |||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||  |||||||||| |||||||| ||||| ||    
T  31468517 atcaatgtctcatccttaatgtggacggcagttgtctcggaaccccaatccgggctgggttcggaggtatatttcgaaacaacgttggtgcttacctatc 31468616  T
Q  532 tggcttctctagcttcattccggaatcgacagacattctgttagctgaactctctgc 588  Q
    ||| | |||  | ||||| |||||||| || ||| || |||||||||||||| ||||    
T  31468617 tggttactccggtttcatcccggaatcaacggacgttttgttagctgaactcactgc 31468673  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 19534671 - 19534619
Alignment:
Q  297 aaagtgttgaattcatgacctttaacattatgcaacatcaaattaccactaca 349  Q
    ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||    
T  19534671 aaagtgttgaactcatgacctttaacattatgctaaatcaatttaccactaca 19534619  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 39605884 - 39605824
Alignment:
Q  289 tatcaaataaagtgttgaattcatgacctttaacattatgcaacatcaaattaccactaca 349  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39605884 tatcaaataaagtgttgaactcatgacctttaacattatgcaacatcaaattaccactaca 39605824  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 6842919 - 6842849
Alignment:
Q  443 atccttaatgtggacgggagttgtctcggaactccaattcgtgctgggttcggaggtatcattcgaaacaa 513  Q
    ||||||||||||||||| |||||| | || ||||| ||||| ||||| ||||| ||| ||||| |||||||    
T  6842919 atccttaatgtggacggaagttgtttaggtactcccattcgagctggtttcggtggtttcattagaaacaa 6842849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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