View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_24 (Length: 621)

Name: NF0622_low_24
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_24
NF0622_low_24
[»] chr6 (22 HSPs)
chr6 (98-598)||(26890566-26891064)
chr6 (235-609)||(27713769-27714127)
chr6 (280-611)||(26853741-26854094)
chr6 (523-611)||(26890187-26890275)
chr6 (324-411)||(26631760-26631847)
chr6 (324-411)||(26737735-26737822)
chr6 (292-409)||(27422277-27422394)
chr6 (313-413)||(27651942-27652041)
chr6 (334-426)||(26966390-26966482)
chr6 (512-613)||(27702263-27702364)
chr6 (339-427)||(31289542-31289630)
chr6 (241-295)||(27651844-27651898)
chr6 (225-298)||(26641217-26641290)
chr6 (225-298)||(26747183-26747256)
chr6 (559-613)||(31289436-31289490)
chr6 (562-611)||(26651232-26651281)
chr6 (562-611)||(26757200-26757249)
chr6 (509-596)||(26631597-26631693)
chr6 (509-596)||(26737572-26737668)
chr6 (512-558)||(26828527-26828573)
chr6 (422-566)||(27652072-27652213)
chr6 (229-298)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (235-609)||(17817-18175)
[»] chr8 (1 HSPs)
chr8 (235-597)||(29269635-29270008)
[»] chr4 (8 HSPs)
chr4 (430-609)||(18692282-18692462)
chr4 (224-306)||(18682705-18682787)
chr4 (98-165)||(5078646-5078713)
chr4 (256-306)||(18650319-18650369)
chr4 (257-306)||(18718539-18718588)
chr4 (509-560)||(18674282-18674333)
chr4 (551-611)||(5083209-5083269)
chr4 (228-272)||(18692037-18692081)
[»] scaffold0003 (1 HSPs)
scaffold0003 (292-409)||(64969-65086)
[»] chr2 (2 HSPs)
chr2 (467-539)||(17989856-17989928)
chr2 (250-306)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 98 - 598
Target Start/End: Complemental strand, 26891064 - 26890566
Alignment:
Q  98 atttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcgtgtgtccagggtgaaaagg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26891064 atttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcttgtgtccagggtgaaaagg 26890965  T
Q  198 cattcattcacatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcat 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890964 cattcattcacattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcat 26890865  T
Q  298 acatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagcca 397  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890864 acatacatgtgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagcca 26890765  T
Q  398 ttcggtgttgttgctgtgacacaggttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttc 497  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890764 ttcggtgttgttgctgtgacacaagttctgaccttcatctggtt--ctctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttc 26890667  T
Q  498 ctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaac 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26890666 ctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaaatgagctgcaaagcataccgttactcactgccctttagaacaac 26890567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 235 - 609
Target Start/End: Original strand, 27713769 - 27714127
Alignment:
Q  235 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 334  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  335 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgaccttca 434  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| ||||             
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- 27713959  T
Q  435 tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga 534  Q
           ||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| |||||||||| ||||||    
T  27713960 -------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga 27714052  T
Q  535 aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg 609  Q
    |||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || |||||||    
T  27714053 aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctg 27714127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 280 - 611
Target Start/End: Complemental strand, 26854094 - 26853741
Alignment:
Q  280 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 379  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  380 tattaatcacaagagccattcggtgttgttgctgtgacacaggtt----------------------ctgaccttcatctggtttactctttacatgagc 457  Q
    ||||||||||||||||||| | ||||||||||||  ||||| |||                      ||||| |||||||| |||||||||| ||| ||     
T  26853994 tattaatcacaagagccatacagtgttgttgctgctacacaagttcggtctcggacacttccaagttctgactttcatctgatttactctttccataagg 26853895  T
Q  458 attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga 557  Q
     ||||||| ||||||||||||||||||||||||||  ||| ||||||  ||| |||||||||||||||||  |||||| |||||| |||||| ||||||     
T  26853894 gttggtgaatatcacatcctccttcgtgcttccttcattcttgaacatgttggttccaatttgtgtactaaaattgaatttctcaaaactctacaactgg 26853795  T
Q  558 gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    ||||||||||||| | |||||||||||||||| ||||| || ||||||| ||||    
T  26853794 gctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtg 26853741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 523 - 611
Target Start/End: Complemental strand, 26890275 - 26890187
Alignment:
Q  523 tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26890275 tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtg 26890187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 324 - 411
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  324 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 411  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 324 - 411
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  324 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 411  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 27422277 - 27422394
Alignment:
Q  292 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 391  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  392 gagccattcggtgttgtt 409  Q
    ||||||| | ||||||||    
T  27422377 gagccatacagtgttgtt 27422394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  313 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 412  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  334 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 426  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 512 - 613
Target Start/End: Original strand, 27702263 - 27702364
Alignment:
Q  512 tccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    ||||| |||||||||| ||| |||||||||| | | || |||||||||||||||||||| | |||||||||| ||||| |||||||| || |||||||||    
T  27702263 tccaaattgtgtactaagatggaaattctcaaagcactccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg 27702362  T
Q  612 ct 613  Q
    ||    
T  27702363 ct 27702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  339 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 427  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  241 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 295  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  225 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 298  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  225 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 298  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 613
Target Start/End: Complemental strand, 31289490 - 31289436
Alignment:
Q  559 ctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtgct 613  Q
    |||||||||||| | |||||||||||||||| |||||||| || |||||||||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgct 31289436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 26651281 - 26651232
Alignment:
Q  562 caaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    ||||||||| | |||||||||||||||| |||||||| ||||||||||||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtg 26651232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 26757249 - 26757200
Alignment:
Q  562 caaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    ||||||||| | |||||||||||||||| |||||||| ||||||||||||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtg 26757200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 596
Target Start/End: Complemental strand, 26631693 - 26631597
Alignment:
Q  509 gattccaatttgtgtactacgattgaaattctcataactcttc---------aactgagctgcaaagcataccgttactcactgccctttagaacaa 596  Q
    |||||||||||||||||||  ||||||||||||| |||||| |         ||||||||||| ||||||| | |||||||||||||||| ||||||    
T  26631693 gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaa 26631597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 596
Target Start/End: Complemental strand, 26737668 - 26737572
Alignment:
Q  509 gattccaatttgtgtactacgattgaaattctcataactcttc---------aactgagctgcaaagcataccgttactcactgccctttagaacaa 596  Q
    |||||||||||||||||||  ||||||||||||| |||||| |         ||||||||||| ||||||| | |||||||||||||||| ||||||    
T  26737668 gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaa 26737572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 558
Target Start/End: Complemental strand, 26828573 - 26828527
Alignment:
Q  512 tccaatttgtgtactacgattgaaattctcataactcttcaactgag 558  Q
    |||||||||| ||||| |||||||||||| | |||||||||||||||    
T  26828573 tccaatttgtatactaagattgaaattctgaaaactcttcaactgag 26828527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 566
Target Start/End: Original strand, 27652072 - 27652213
Alignment:
Q  422 gttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgt 521  Q
    ||||||| ||||||||  ||| ||||||  || || || ||||| |||||||||||| |  |||||||   ||||| ||||||  | |||||||||||||    
T  27652072 gttctgatcttcatcttcttttctctttctataaggataggtgaatatcacatcctcttctgtgcttc---ttttcttgaacatgtggattccaatttgt 27652168  T
Q  522 gtactacgattgaaattctcataactcttcaactgagctgcaaag 566  Q
    |||||| |||||||||  | | | ||||  |||||||||||||||    
T  27652169 gtactaagattgaaatcttaaaacctctcaaactgagctgcaaag 27652213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  229 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 298  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 138; Significance: 8e-72; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 235 - 609
Target Start/End: Complemental strand, 18175 - 17817
Alignment:
Q  235 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 334  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  335 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgaccttca 434  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| ||||             
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- 17985  T
Q  435 tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga 534  Q
           ||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| |||||||||| ||||||    
T  17984 -------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga 17892  T
Q  535 aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg 609  Q
    |||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || |||||||    
T  17891 aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctg 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 235 - 597
Target Start/End: Original strand, 29269635 - 29270008
Alignment:
Q  235 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 334  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  335 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgaccttca 434  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||| ||||||  |||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctg--cttca 29269832  T
Q  435 -------------tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgt 521  Q
                 |||| ||||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| ||||    
T  29269833 gaaaattccaagttctgatttactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttattgaacacgtagattccaaattgt 29269932  T
Q  522 gtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaac 597  Q
    |||||| ||| ||||||| || | | || |||||||||||||||||||| | |||||||||||||||| |||||||    
T  29269933 gtactaagatggaaattcacaaagcactccaactgagctgcaaagcatatcattactcactgccctttcgaacaac 29270008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 430 - 609
Target Start/End: Original strand, 18692282 - 18692462
Alignment:
Q  430 cttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattg-attccaatttgtgtactac 528  Q
    ||||||||| ||| ||||||  || || |||| ||| ||||||||||| || | |||||  ||| ||| |||||||| || |||| ||||||| |||||     
T  18692282 cttcatctgattttctctttctataaggattgatgaatatcacatcctgctccatgctttttttcttcttgaacacagtggattctaatttgtctactaa 18692381  T
Q  529 gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg 609  Q
    |||||||||||||| |||||| |||||||| ||||||||||| |  ||||||||||||||| |||||||| || |||||||    
T  18692382 gattgaaattctcaaaactctccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattctg 18692462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  224 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 306  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 5078713 - 5078646
Alignment:
Q  98 atttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa 165  Q
    |||||||||||||| ||||||||||| |  ||||||||||||| | ||||||||||||||||||||||    
T  5078713 atttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa 5078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  256 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 306  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  257 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 306  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 18674282 - 18674333
Alignment:
Q  509 gattccaatttgtgtactacgattgaaattctcataactcttcaactgagct 560  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||||||||    
T  18674282 gattccaatttgtctactaagattgaaattctcaaaactctccaactgagct 18674333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 611
Target Start/End: Complemental strand, 5083269 - 5083209
Alignment:
Q  551 caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg 611  Q
    |||||||||||||||||||| | ||||||||||||||||  ||||| | || |||||||||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtg 5083209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  228 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 272  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 65086 - 64969
Alignment:
Q  292 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 391  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  392 gagccattcggtgttgtt 409  Q
    ||||||| | ||||||||    
T  64986 gagccatacagtgttgtt 64969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 17989856 - 17989928
Alignment:
Q  467 tatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattc 539  Q
    ||||||||||||||||||||||  ||| ||  ||||||||| |||||| |||||||||||| ||||| |||||    
T  17989856 tatcacatcctccttcgtgcttgttttcttattgaacacatggattcccatttgtgtactaagattggaattc 17989928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  250 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 306  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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