View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0622_low_25 (Length: 609)
Name: NF0622_low_25
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 98 - 597
Target Start/End: Complemental strand, 38259879 - 38259380
Alignment:
| Q |
98 |
ggtttcacattcagcaccatgacactaaatcttcttctcctaatagcaatggtagcaaccaacattctctccctctaccatctctccacaactctccaat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259879 |
ggtttcacattcagcaccatgacactaaatcttcttctcctaatagcaatggtagcaaccaacattctctccctctaccatctctccacaactctccaat |
38259780 |
T |
|
| Q |
198 |
cccctaaatccccaaaaccacttccaccgatccccgatgaactcctccgtcaacttcacaccatacgcgccaccatcaaccacctcacgcgcctccagaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259779 |
cccctaaatccccaaaaccacttccaccgatacccgatgaactcctccgtcaacttcacaccatacgcgccaccatcaaccacctcacgcgcctccagaa |
38259680 |
T |
|
| Q |
298 |
caccaaccccaacaccaacacaaaatcatcaatcccttcagatctactcctctactcacacatctcaccaattgcttcttcttgtcataaccaccctgat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259679 |
caccaaccccaacaccaacacaaaatcatcaatcccttcagatctactcctctactcacacatctcaccaattgcttcttcttgtcataaccaccctgat |
38259580 |
T |
|
| Q |
398 |
cttcttcataagtacatgacctacacaccgttctcgatttgtccttctgattcagagctcgctgaaagcttaattcttcgcggttgtcatcctctccctc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259579 |
cttcttcataagtacatgacctacacaccgttctcgatttgtccttctgattcagagctcgctgaaagcttaattcttcgcggttgtcatcctctccctc |
38259480 |
T |
|
| Q |
498 |
gccggagatgtttctctccgacgccgaagaaacaaacttcgtcgagttctcttccgaaaaatccttttccttcttccttacctgattcctctgttatctg |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38259479 |
gccggagatgtttctctccgacgccgaagaaacaaacttcgtcgagttctcttccgaaaaatccttttccttcttccttacctgattcctctgttatctg |
38259380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 393155 - 393067
Alignment:
| Q |
506 |
tgtttctctccgacgccgaagaaacaaacttcgtcgagttctcttccgaaaaatccttttccttcttccttacctgattcctctgttat |
594 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
393155 |
tgtttctctccggcgccgaagaaacaaactctgtccaattctcttctgaaaaatccttttccttcttcattacctgattcctctgttat |
393067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 12107515 - 12107471
Alignment:
| Q |
306 |
ccaacaccaacacaaaatcatcaatcccttcagatctactcctct |
350 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
12107515 |
ccaacaccaacacaaattcctcaatcccttcagatctattcctct |
12107471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2076 times since January 2019
Visitors: 3811