View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_26 (Length: 587)
Name: NF0622_low_26
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 32 - 567
Target Start/End: Original strand, 34419166 - 34419694
Alignment:
| Q |
32 |
ttcagactagtggaaatatactcccaaatataattcagttatttattatttattcttggtttcaaatggattgaaattgctatgactgttatccagatga |
131 |
Q |
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|||| ||||||||||||||| |||||| || | || | ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
34419166 |
ttcaaactagtggaaatatattcccaattacatttaacttatttactatttattcttggttttaaatggattgaaattgcaatgactgttatccagatga |
34419265 |
T |
|
| Q |
132 |
ataaattaataatttgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttg |
231 |
Q |
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|||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419266 |
ataaattaat---ttgttctttgatatagtgcatttgaggctgaactagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttg |
34419362 |
T |
|
| Q |
232 |
gtcttctttctgttggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaa |
331 |
Q |
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| T |
34419363 |
gtcttctttctgttggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaa |
34419462 |
T |
|
| Q |
332 |
gacagttaaatcagtttttctttttattgatttatcatgtattagttttagacctatcacctaatttgcacacctttcttctactacttgtttacaggaa |
431 |
Q |
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| T |
34419463 |
gaccgttaaatcagtatttctttttattgatttatcatgtattagttttagacctatcgcctaatttgcacacctttcttctactgctggtttacaggaa |
34419562 |
T |
|
| Q |
432 |
acaagaatgggcttttgttgccccataccatcacagaccaaggtgattcctgttacaatgtagttatgtttgtttttatttatagtacatgtttgtctcc |
531 |
Q |
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| T |
34419563 |
acaagaatgggcttttgttgccccataccaccacagaccaaggtgattcctgttacaatgttattatgtttgtttttatttgtagtacatgtttgtc--- |
34419659 |
T |
|
| Q |
532 |
ttccttaaagtataggctgtctagggttaatctgta |
567 |
Q |
| |
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||||||||||||||||||| |||| ||||| |||| |
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| T |
34419660 |
-tccttaaagtataggctgtttaggattaatttgta |
34419694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 34422780 - 34422841
Alignment:
| Q |
421 |
gtttacaggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
482 |
Q |
| |
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|||| ||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
34422780 |
gtttgcaggaaataagaatgggcttctattgccccataccaccacagaccaaggtgattcct |
34422841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 34422601 - 34422713
Alignment:
| Q |
146 |
tgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttggtcttctttctgtt |
245 |
Q |
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|||| ||||||| ||||||||||| ||||| ||| ||||| ||||||||||| | ||||| ||||||| | | ||||| ||||||||| |||| | || |
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| T |
34422601 |
tgttgtttgatacagtgcatttgaggctgagttatcagatgttatccctgtgattaaaacttccattggtggtactcgtattgttggtcgcctttgtatt |
34422700 |
T |
|
| Q |
246 |
ggtaaagtatttt |
258 |
Q |
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|||||| |||||| |
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| T |
34422701 |
ggtaaattatttt |
34422713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 24346271 - 24346326
Alignment:
| Q |
427 |
aggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
482 |
Q |
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||||||||||||||| ||| | ||||||||||||| |||||| |||||| |||||| |
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| T |
24346271 |
aggaaacaagaatggccttctcttgccccataccaccacagatcaaggtaattcct |
24346326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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