View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_29 (Length: 543)
Name: NF0622_low_29
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 96 - 467
Target Start/End: Original strand, 15187761 - 15188125
Alignment:
| Q |
96 |
aacttggaactcgaccatatctcctcgaatttgaattatttactgttgttgcaccgtgcaatcgttgtaacctcgttagatcacaacgcatgtcactttg |
195 |
Q |
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| T |
15187761 |
aacttggaactcgaccatatctcctcgaatttgaattatttactgttgttgcaccgtgcaaccgttgtaacctcgttagatcac-------gtcactttg |
15187853 |
T |
|
| Q |
196 |
acaggaaatatacatcaaactatgaaggaagacaaattatgtccaaaccatattgcattgcatatacgaaacatatctaatattttacacaaagacatag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15187854 |
acaggaaatatacatcaaactatgaaggaagacaaattatgttcaaaccatattgcattgcatatacgaaacatatctaatattttacacaaagacatag |
15187953 |
T |
|
| Q |
296 |
ttatggtaatagttcagaatctggaaataaacaagcatatttttcactttagtcgctgtagtattctacagattcatcttcgtagaattcgtcgtcaaca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15187954 |
ttatggtaatagttcagaatctggaaataaacaagcatatttttcactttagtcgctgtagtattctacagattcatcttcgtagaattcgtcgtcaaca |
15188053 |
T |
|
| Q |
396 |
tcatcatcccactcatcataaagaagagattttagctgctgtgccttcagctgttcttgaattctgtctctg |
467 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15188054 |
tcatcatcccactcgtcataaagaagagattttagctgctgtgccttcagctgttcttgaattctgtctctg |
15188125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 241 - 467
Target Start/End: Complemental strand, 24190692 - 24190466
Alignment:
| Q |
241 |
aaccatattgcattgcatatacgaaacatatctaatattttacacaaagacatagttatggtaatagttcagaatctggaaataaacaagcatatttttc |
340 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24190692 |
aaccatattgcattacatatacgaaacatatctaatcttttacacaaagacatggttatggtaatggttcagaatctggaaataaacaagcatatttttc |
24190593 |
T |
|
| Q |
341 |
actttagtcgctgtagtattctacagattcatcttcgtagaattcgtcgtcaacatcatcatcccactcatcataaagaagagattttagctgctgtgcc |
440 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
24190592 |
cctttagccgctgtagtattctacagattcatcttcatagaattcatcgtcaacattatcatcccactcgtcataaagaagagattttatctgttgtgcc |
24190493 |
T |
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| Q |
441 |
ttcagctgttcttgaattctgtctctg |
467 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24190492 |
ttcagctgttcttgaattctgtctctg |
24190466 |
T |
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