View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0622_low_3 (Length: 1009)
Name: NF0622_low_3
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0622_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 492 - 927
Target Start/End: Original strand, 36663348 - 36663783
Alignment:
| Q |
492 |
tgtttgatgagtttgttgttgcttgataattattgggtctataagtgaattgattagatttgaaactttgagtgtgtataatattgtttgatgaacttgg |
591 |
Q |
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| T |
36663348 |
tgtttgatgagtttgttgttgcttgatgctttttgggtctataagtgaattgattagatttgaaactttgagtgtgtataatattgtttgatgaacttgg |
36663447 |
T |
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| Q |
592 |
ttgtgacattctgaaactgtaattgtgtaatctgatctgatgaacttggttggcacattttgaaatttgaatcttaagtatagtcttgtgtgttgaactt |
691 |
Q |
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| T |
36663448 |
ttgtgacattctgaaactgtaattgtgtaatctgatctgatgaacttggttggcacattttgaaattggaatcataagtataatcttgtgtgttgaactt |
36663547 |
T |
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| Q |
692 |
ttcattggaaaatattctgataattgtagcttataggtagctcaatcattttgttagcatgtgctagtttttgatccattttggtttcttggaagttgaa |
791 |
Q |
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| T |
36663548 |
ttcattggaaaatattctgataattgtagcttataggtagctcaatcattttgttagcatgtgctagtttttgatccattttggtttcttggaagttgaa |
36663647 |
T |
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| Q |
792 |
attgtgattggtctacttggttagatgggatgtatgaataatgtatgtatagaatgggatggtgttattgggtgagttctatttaggtgtcgaaatgcca |
891 |
Q |
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| T |
36663648 |
attgtgattggtctacttggttagatgggatgtataaataatgtatgtatagaatgggatggtgttattgggtgagttctatttaggtgtcgaaatgcca |
36663747 |
T |
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| Q |
892 |
ttgttcgatgtgcatgaatctgtaaatcttgtctct |
927 |
Q |
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| T |
36663748 |
ttgttcgatgtgcatgaatctgtaaatcttgtctct |
36663783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 36662941 - 36663041
Alignment:
| Q |
97 |
ttgaacactcaggttgttgttcgagttgcacgtgtgtctgcacaaacgtggcaatggttgtcttgcattcatgatccaataaacagtgatcagcttttgg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36662941 |
ttgaacactcaggttgttgttcgagttgcacgtgtgtctgcacaaacgtggcaatggttgtcttgcattcatgatccaataaacagtgatcagcttttgg |
36663040 |
T |
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| Q |
197 |
a |
197 |
Q |
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| T |
36663041 |
a |
36663041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 36663201 - 36663258
Alignment:
| Q |
345 |
aacctctactcttcatcttgaacatgattattattatcactcccattctgattgtaag |
402 |
Q |
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| T |
36663201 |
aacctctactcttcatcttgaacatgattattattatcactcccattctgattgtaag |
36663258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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