View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0622_low_31 (Length: 534)

Name: NF0622_low_31
Description: NF0622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0622_low_31
NF0622_low_31
[»] chr7 (8 HSPs)
chr7 (1-256)||(45829465-45829715)
chr7 (387-450)||(45824713-45824776)
chr7 (447-526)||(27965220-27965301)
chr7 (447-511)||(45824591-45824655)
chr7 (113-154)||(13096087-13096128)
chr7 (487-524)||(45823542-45823579)
chr7 (463-522)||(18196128-18196188)
chr7 (447-522)||(26000017-26000093)
[»] chr3 (8 HSPs)
chr3 (447-521)||(4737780-4737854)
chr3 (451-518)||(5578150-5578217)
chr3 (447-521)||(32077475-32077549)
chr3 (451-526)||(46835540-46835615)
chr3 (447-521)||(51646882-51646956)
chr3 (447-514)||(45640689-45640756)
chr3 (462-521)||(15451633-15451692)
chr3 (484-517)||(8508676-8508709)
[»] chr2 (6 HSPs)
chr2 (1-105)||(22141351-22141450)
chr2 (102-160)||(22141762-22141820)
chr2 (447-521)||(24538234-24538308)
chr2 (467-521)||(28296914-28296968)
chr2 (480-521)||(7828940-7828981)
chr2 (467-511)||(22142305-22142349)
[»] chr8 (4 HSPs)
chr8 (447-521)||(14836396-14836470)
chr8 (447-526)||(30850194-30850273)
chr8 (208-256)||(27277363-27277411)
chr8 (447-521)||(27229234-27229309)
[»] chr6 (2 HSPs)
chr6 (446-523)||(9852098-9852175)
chr6 (467-521)||(29279773-29279827)
[»] chr4 (7 HSPs)
chr4 (447-511)||(47965535-47965599)
chr4 (477-523)||(30179071-30179117)
chr4 (447-504)||(52525933-52525990)
chr4 (475-526)||(14866628-14866679)
chr4 (387-450)||(14866532-14866595)
chr4 (390-449)||(43046094-43046153)
chr4 (113-166)||(43045793-43045846)
[»] chr1 (3 HSPs)
chr1 (447-526)||(20602210-20602289)
chr1 (478-521)||(29308693-29308736)
chr1 (463-520)||(5933836-5933893)
[»] scaffold0071 (1 HSPs)
scaffold0071 (462-521)||(10499-10558)
[»] scaffold0596 (1 HSPs)
scaffold0596 (462-514)||(1690-1742)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 45829715 - 45829465
Alignment:
Q  1 tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaaggagaaggagaaggagaaggagaaaaaacttacacatagcagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||| | |||    
T  45829715 tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaacga-----agaaggagaaggagaaaaaacttacacatgggagt 45829621  T
Q  101 gaaaaggagaagaaatcatcccacctctcctagccgcgacggagcgtgtcgtataaaccaacagattgaatgattccgaaattagcagtggtgtgttagg 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  45829620 gaaaaggagaagaaatcatcccagctctcctagccgcgacggagcgtgtcatataaaccaaaggattgaatgattccgatattagcagtggtgtgttagg 45829521  T
Q  201 agtctttcactgttatcgcggtggtttccggtgaggtggccggaactgtaggcgat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45829520 agtctttcactgttatcgcggtggtttccggtgaggtggccggaactgtaggcgat 45829465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 45824776 - 45824713
Alignment:
Q  387 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattgg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45824776 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaactgattgg 45824713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 447 - 526
Target Start/End: Original strand, 27965220 - 27965301
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttatt--catattagaaataagtatgatatgat 526  Q
    |||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||   |||||||||||||||||||||||||    
T  27965220 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgatatgat 27965301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 45824655 - 45824591
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaa 511  Q
    ||||||||||||| || ||||||||| ||||||||| |||||||||||| ||||  |||||||||    
T  45824655 ttggagccaaaactatcagaattagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 13096087 - 13096128
Alignment:
Q  113 aaatcatcccacctctcctagccgcgacggagcgtgtcgtat 154  Q
    |||||| |||||| || |||||||||||||||||||||||||    
T  13096087 aaatcagcccaccgctactagccgcgacggagcgtgtcgtat 13096128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 45823579 - 45823542
Alignment:
Q  487 ttagcaatgttattcatattagaaataagtatgatatg 524  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  45823579 ttagcaatgttattgctattagaaataagtatgatatg 45823542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 18196188 - 18196128
Alignment:
Q  463 tagaattaggcttggcacaatttgttagcaatgttatt-catattagaaataagtatgata 522  Q
    |||||||||| |||||||| |||||||||||| |||||   | ||||||||||||||||||    
T  18196188 tagaattagggttggcacactttgttagcaattttattattttttagaaataagtatgata 18196128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 522
Target Start/End: Complemental strand, 26000093 - 26000017
Alignment:
Q  447 ttggagccaaaaccatt-agaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgata 522  Q
    ||||||||||||||||| || |||||| ||| |||| ||| ||| || |||||||  ||||||||||||||| ||||    
T  26000093 ttggagccaaaaccatttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 4737780 - 4737854
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4737780 ttggagccaaaaccattagaattagggttggcacaatttgttagcaatgttattcatattagaaataagtatgat 4737854  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 5578150 - 5578217
Alignment:
Q  451 agccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtat 518  Q
    |||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  5578150 agccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 5578217  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 32077475 - 32077549
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||||||| |  |||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  32077475 ttggagccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtatgat 32077549  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 526
Target Start/End: Original strand, 46835540 - 46835615
Alignment:
Q  451 agccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 526  Q
    |||||||||||| |  |||||| ||| ||||||||||||  | |||||||||||||||||||||||||||||||||    
T  46835540 agccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 51646956 - 51646882
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||| ||| |  |||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtatgat 51646882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 45640689 - 45640756
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataa 514  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| || ||||||| |||||||| ||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataa 45640756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Complemental strand, 15451692 - 15451633
Alignment:
Q  462 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    ||||||||||| |||| ||| ||||||||||||||||   ||||||||||||||| ||||    
T  15451692 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 15451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 517
Target Start/End: Original strand, 8508676 - 8508709
Alignment:
Q  484 ttgttagcaatgttattcatattagaaataagta 517  Q
    |||||| |||||||||||||||||||||||||||    
T  8508676 ttgttaacaatgttattcatattagaaataagta 8508709  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22141351 - 22141450
Alignment:
Q  1 tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaaggagaaggagaaggagaaggagaaaaaacttacacatagcagt 100  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     | |||||||||| | ||||||||||||||||||||||||    
T  22141351 tgaaggtgaaaaacttaaacaaatctggatttaaagatgatggaaaaaatatacca-----acggagaaggaggatgagaaaaaacttacacatagcagt 22141445  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 22141762 - 22141820
Alignment:
Q  102 aaaaggagaagaaatcatcccacctctcctagccgcgacggagcgtgtcgtataaacca 160  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  22141762 aaaaggagaagaaatcagcccacctctcctagccgcgacggtgcgtgtcgtataaacca 22141820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 24538308 - 24538234
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    ||||||||||||| ||||| |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagtatgat 24538234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 28296914 - 28296968
Alignment:
Q  467 attaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 28296968  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 521
Target Start/End: Original strand, 7828940 - 7828981
Alignment:
Q  480 caatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  7828940 caatttgttaacattgttattcatattagaaataagtatgat 7828981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 511
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  467 attaggcttggcacaatttgttagcaatgttattcatattagaaa 511  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 14836470 - 14836396
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14836470 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtatgat 14836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 526
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 526  Q
    |||||||||||| |||||  |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 27277363 - 27277411
Alignment:
Q  208 cactgttatcgcggtggtttccggtgaggtggccggaactgtaggcgat 256  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||||    
T  27277363 cactgttatcgcggaggtttccggtgaggtggccggaactcgaggcgat 27277411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 27229309 - 27229234
Alignment:
Q  447 ttggagccaaaaccatta-gaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||| ||||| |||||||| ||| | ||| || ||| ||||| |||||||||||||||||||||||||    
T  27229309 ttggagccaaaatcattaagaattagggttgacgcaaattattaacaatgctattcatattagaaataagtatgat 27229234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 446 - 523
Target Start/End: Complemental strand, 9852175 - 9852098
Alignment:
Q  446 attggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatat 523  Q
    |||||||||||||  ||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagtataatat 9852098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 29279827 - 29279773
Alignment:
Q  467 attaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 29279773  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 47965535 - 47965599
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaa 511  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||||    
T  47965535 ttggagccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 477 - 523
Target Start/End: Original strand, 30179071 - 30179117
Alignment:
Q  477 gcacaatttgttagcaatgttattcatattagaaataagtatgatat 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtatgatat 30179117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 52525933 - 52525990
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcata 504  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  52525933 ttggagccaaaaccattagaattagggttgacacaaattgttagcaatgttattcata 52525990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 14866628 - 14866679
Alignment:
Q  475 tggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 526  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgatatgat 14866679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 14866532 - 14866595
Alignment:
Q  387 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattgg 450  Q
    |||||||||||| ||||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  14866532 ggttgtaaatgatataggaaatggaaaaacatttattaatcacatttgaatctgaactgattgg 14866595  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 43046094 - 43046153
Alignment:
Q  390 tgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattg 449  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||||||| |||| ||||||    
T  43046094 tgtaaatcacataggaaatggaacaacatttattaacaacatttgaatttgaactgattg 43046153  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 43045793 - 43045846
Alignment:
Q  113 aaatcatcccacctctcctagccgcgacggagcgtgtcgtataaaccaacagat 166  Q
    |||||| ||||||  ||||| |||| ||||||||||||||| ||||||||||||    
T  43045793 aaatcagcccaccgttcctaaccgcaacggagcgtgtcgtagaaaccaacagat 43045846  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 526
Target Start/End: Complemental strand, 20602289 - 20602210
Alignment:
Q  447 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 526  Q
    |||||||||||||||| |  || ||| ||||||||| |||||| |||||||||||||||||||| ||| |||||||||||    
T  20602289 ttggagccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgatatgat 20602210  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 521
Target Start/End: Complemental strand, 29308736 - 29308693
Alignment:
Q  478 cacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29308736 cacaatttgttaacaatgttattcatattagaaataagtatgat 29308693  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 5933836 - 5933893
Alignment:
Q  463 tagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatga 520  Q
    |||||||||| |||||||| |||||||||||| |||||||||| |||||||| |||||    
T  5933836 tagaattagggttggcacactttgttagcaatattattcatatcagaaataaatatga 5933893  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 10499 - 10558
Alignment:
Q  462 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 521  Q
    ||||||||||| |||| ||| ||||||||||||||||   ||||||||||||||| ||||    
T  10499 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 10558  T

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Target: scaffold0596 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 514
Target Start/End: Original strand, 1690 - 1742
Alignment:
Q  462 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataa 514  Q
    |||| |||||| |||||||||  ||||| || |||||||||||||||||||||    
T  1690 ttaggattagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

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